Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06400 1748 / 0 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT5G18620 1726 / 0 CHR17 chromatin remodeling factor17 (.1.2) AT3G06010 497 / 4e-158 ATCHR12 Homeotic gene regulator (.1) AT5G19310 493 / 5e-157 Homeotic gene regulator (.1) AT2G13370 480 / 9e-147 CHR5 chromatin remodeling 5 (.1) AT5G66750 447 / 4e-143 CHR01, CHA1, SOM1, CHR1, SOM4, DDM1, ATDDM1 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) AT2G28290 450 / 3e-134 CHR3, SYD SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT2G25170 434 / 3e-132 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) AT2G44980 392 / 3e-121 ASG3 ALTERED SEED GERMINATION 3, SNF2 domain-containing protein / helicase domain-containing protein (.1.2) AT4G31900 392 / 2e-118 PKR2 PICKLE RELATED 2, chromatin remodeling factor, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G205600 [exp] 1875 / 0 AT3G06400 1724 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.008G149900 [exp] 495 / 4e-157 AT3G06010 1485 / 0.0 Homeotic gene regulator (.1) Potri.010G091200 [exp] 489 / 9e-155 AT3G06010 1408 / 0.0 Homeotic gene regulator (.1) Potri.001G253400 [exp] 485 / 2e-148 AT2G13370 2206 / 0.0 chromatin remodeling 5 (.1) Potri.007G026700 [exp] 460 / 7e-148 AT5G66750 993 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.009G047800 [exp] 483 / 9e-148 AT2G13370 2129 / 0.0 chromatin remodeling 5 (.1) Potri.019G129900 [exp] 457 / 7e-147 AT5G66750 1047 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.010G019150 [exp] 448 / 2e-133 AT2G28290 1501 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.008G195900 [exp] 445 / 1e-132 AT2G28290 1440 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033967 [exp] 1633 / 0 AT5G18620 1650 / 0.0 chromatin remodeling factor17 (.1.2) Lus10012813 [exp] 937 / 0 AT5G18620 952 / 0.0 chromatin remodeling factor17 (.1.2) Lus10034064 [exp] 498 / 2e-158 AT3G06010 1422 / 0.0 Homeotic gene regulator (.1) Lus10010522 [exp] 496 / 6e-158 AT3G06010 1358 / 0.0 Homeotic gene regulator (.1) Lus10022423 [exp] 485 / 2e-148 AT2G13370 2250 / 0.0 chromatin remodeling 5 (.1) Lus10009711 [exp] 476 / 3e-146 AT2G13370 2115 / 0.0 chromatin remodeling 5 (.1) Lus10041735 [exp] 457 / 4e-146 AT5G66750 1069 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10005339 [exp] 442 / 1e-134 AT2G25170 1787 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10041019 [exp] 440 / 6e-134 AT2G25170 1776 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10012798 [exp] 422 / 7e-125 AT2G28290 1549 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit CL0023 [poplar] [flax] PF09110 [poplar] [flax] HAND HAND CL0123 [poplar] [flax] HTH PF09111 [poplar] [flax] SLIDE SLIDE CL0023 [poplar] [flax] P-loop_NTPase PF13892 [poplar] [flax] DBINO DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.010G021400.7 pacid=42799592 polypeptide=Potri.010G021400.7.p locus=Potri.010G021400 ID=Potri.010G021400.7.v4.1 annot-version=v4.1 ATGGCGAAACCTTCGAAGCAGCAAACATCATCTGATGAGGCGATGTCTTCGGAGGAAGAGCCAATTAACGAGCAGGTCAGCGAAGAGGAAGATGAGGAGG AGATCGAAGCGGTGGCTCGCTCAGCGGACTCCGATGAAGATGAGGCCGCCGGAGATGCTGAAGGAGACGACGGCGAAGGCGACGAGGCTGACGAGGAAGT AACCAACAATGAAATTAGCAAGCGTGAAAGGGAGAGACTCAAAGAAATGCAGAAATTGAAGAAACACAAGATTCAGGAGATACTGGATCAACAAAATGCT GCTATAGATGCTGATATGAATAACAGGGGGAAGGGGCGCTTGCAGTATTTGCTGCAGCAAACTGAGTTGTTTGCTCATTTTGCTAAACATGATCAATCAT CATCCCAGAAGAAGGCTAAGGGAAGGGGTCGGCATGCCTCAAAAGTAACCGAGGAGGAGGAAGATGAAGAATGCTTGAAGGAGGAAGAAGATGGTATATC AGGAAACACACGGCTGATGACACAGCCATCATGTATTCAAGGAAAGATGAGGGATTACCAGCTTGCTGGATTGAACTGGCTTATAAGACTGTATGAGAAT GGTATAAACGGAATTCTTGCAGATGAAATGGGTCTTGGCAAAACCTTACAAACAATCTCTTTAATGGGCTACCTGCATGAATTCAGAGGAATCACTGGTC CTCATATGGTAGTGGCTCCAAAATCTACACTTGGTAACTGGATGAATGAAATTCGTCGTTTTTGTCCAGTTTTACGTGCTGTCAAGTTTCTTGGCAATCC TGATGAAAGAAAACATATACGTGAAGAGTTGCTGGCTGCTGGGAAATTTGATGTTTGTGTTACAAGCTTTGAAATGGCCATCAAAGAGAAGTCCACCTTG CGTCGCTTCAGTTGGCGGTATATTATCATTGATGAAGCTCATCGGATTAAGAATGAAAATTCTCTCCTTTCAAAAACAATGAGGCTTTATAACACTAATT ACCGCCTCCTCATTACTGGAACTCCACTTCAGAACAATCTTCACGAACTCTGGGCTCTTCTCAACTTTCTTCTGCCAGAGATATTTAGCTCAGCTGAAAC TTTTGATGAATGGTTTCAAATTTCTGGTGAAAATGACCAGCAGGAAGTTGTTCAACAACTGCACAAGGTCCTTCGGCCATTTCTTCTCCGAAGATTGAAA TCAGATGTTGAGAAAGGTTTGCCTCCCAAAAAGGAAACCATACTGAAGGTTGGCATGTCCCAGATGCAGAAACAGTACTACAAGGCTTTGTTGCAGAAAG ATCTTGAAGTTGTAAATGCTGGTGGAGAACGTAAGCGTCTTTTGAACATAGCAATGCAGCTCCGAAAATGCTGTAACCATCCATATCTTTTCCAGGGTGC TGAACCTGGTCCACCATACTCTACAGGAGACCATCTTGTTACCAATGCTGGTAAGATGGTTTTGTTGGATAAGTTGCTTCCTAAGCTCAAAGAGAGGGAT TCCAGGGTCTTAATTTTTTCACAGATGACAAGGTTGCTTGACATTCTTGAAGACTATTTGATGTTTCGTGGGTATCTGTATTGTCGGATTGATGGAAATA CCGGTGGAGAAGATCGTGACGCGTCCATCGATGCCTTTAACAAGCCAGGAAGTGAGAAATTTTGCTTCTTGTTGTCAACAAGAGCTGGGGGACTGGGTAT TAATCTTGCCACTGCAGATGTTGTCATTCTTTATGACAGTGACTGGAACCCACAAGTTGATTTACAAGCTCAGGACCGTGCTCATAGGATTGGTCAAAAG AAAGAAGTCCAAGTGTTCCGTTTTTGCACGGAGTATACAATTGAGGAAAAAGTGATTGAGAGGGCTTATAAGAAGCTTGCACTTGATGCCTTGGTTATCC AACAAGGAAGATTGGCGGAGCAGAAAACTGTTAATAAAGATGAGCTGCTTCAAATGGTGAGGTTTGGGGCTGAAATGGTTTTCAGCTCTAAGGATAGTAC CATTACAGATGAGGACATTGACAGAATCATTGCTAAGGGAGAAGAGGCAACAGCTGAGCTTGATGCCAAGATGAAGAAGTTTACAGAAGATGCAATCAAG TTTAAAATGGATGACACTGCTGAATTATATGATTTTGATGACGATAAGGATGAGAACAAGTTTGACTTCAAGAAAATTGTCAGTGAGAACTGGATTGAAC CTCCAAAGAGGGAGCGGAAGCGCAATTACTCAGAATCCGAATACTTCAAGCAAACAATGCGCCAGGGTGGTCCAGCAAAACCAAAAGAACCTCGAATTCC TCGCATGCCTCAATTGCATGATTTCCAGTTTTTCAACACACAAAGGCTTAGTGAGCTGTATGAAAAAGAAGTACGCTACCTCATGCAAGCACATCAAAAG AATCAACTGAAAGATACAATTGAGGTGGATGAACCTGAAGAGACTGGAGATCCATTGACTGCTGAGGAACTGGAAGAAAAAGAACGGCTTTTGGAAGAGG GATTTTCCTCGTGGAGTAGAAGAGACTTCAATACCTTTATTAGGGCTTGCGAGAAATATGGTCGGAATGACATAAGAAGTATTGCTACTGAAATGGAAGG GAAAACAGAGGAGGAAGTTGAAAGATATGCTAAAGTTTTCAAAGAGCGATACAAAGAGTTAAATGATTATGATAGGATCATTAAGAACATTGAAAGAGGG GAGGCCAGAATTTCTCGTAAAGATGAGATCATGAAAGCAATAGGGAAGAAGCTGGATCGCTACAAGAATCCTTGGCTTGAATTGAAGATCCAGTATGGTC AGAACAAAGGGAAGTTGTACAATGAAGAATGCGATCGTTTCATGATATGCATGGTTCACAAGCTTGGATATGGGAACTGGGATGAGCTGAAAGCAGCATT CCGTACATCGGCTTTGTTTCGTTTTGATTGGTTTGTAAAGTCTCGTACAACTCAAGAACTTGCAAGGAGATGTGATACCTTAATTCGGTTGGTGGAGAAG GAAAACCAAGAATATGATGAGAGGGAGAGACAGGCTCGTAAAGAAAAGAAGCTTGCCAAGCAGAGCATGACCCCGTCCAAGCGTTCCATGGGAAGACAGA CCGACAGCCCTCCTTCCCTAAAGAAGCGGAAACAGTTATCAATGGATGATTACCCAAACATGGCAAGGAAAAAGGAAGAAGTGATTTAA
AA sequence Show only first row Show all	>Potri.010G021400.7 pacid=42799592 polypeptide=Potri.010G021400.7.p locus=Potri.010G021400 ID=Potri.010G021400.7.v4.1 annot-version=v4.1 MAKPSKQQTSSDEAMSSEEEPINEQVSEEEDEEEIEAVARSADSDEDEAAGDAEGDDGEGDEADEEVTNNEISKRERERLKEMQKLKKHKIQEILDQQNA AIDADMNNRGKGRLQYLLQQTELFAHFAKHDQSSSQKKAKGRGRHASKVTEEEEDEECLKEEEDGISGNTRLMTQPSCIQGKMRDYQLAGLNWLIRLYEN GINGILADEMGLGKTLQTISLMGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPDERKHIREELLAAGKFDVCVTSFEMAIKEKSTL RRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLK SDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYSTGDHLVTNAGKMVLLDKLLPKLKERD SRVLIFSQMTRLLDILEDYLMFRGYLYCRIDGNTGGEDRDASIDAFNKPGSEKFCFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQK KEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIK FKMDDTAELYDFDDDKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPAKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQAHQK NQLKDTIEVDEPEETGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIRSIATEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERG EARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSALFRFDWFVKSRTTQELARRCDTLIRLVEK ENQEYDERERQARKEKKLAKQSMTPSKRSMGRQTDSPPSLKKRKQLSMDDYPNMARKKEEVI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06400		CHR11	chromatin-remodeling protein 1...		Potri.010G021400 [exp]	0	1
AT5G46070			Guanylate-binding family prote...		Potri.011G058500 [exp]	4.47	0.8105
AT1G13220		CRWN2, LINC2	LITTLE NUCLEI2, CROWDED NUCLEI...		Potri.008G114800 [exp]	4.47	0.8565
AT3G58110			unknown protein		Potri.013G119700 [exp]	4.47	0.8648
AT2G27980			Acyl-CoA N-acyltransferase wit...		Potri.009G003900 [exp]	6.70	0.8600
AT4G08310			unknown protein		Potri.002G085000 [exp]	11.04	0.7108
AT3G51620			PAP/OAS1 substrate-binding dom...		Potri.019G128800 [exp]	11.44	0.7058
AT5G41770			crooked neck protein, putative...		Potri.001G094400 [exp]	12.00	0.8124
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Potri.007G113300 [exp]	12.44	0.8470	HAF902
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.014G000500 [exp]	12.96	0.8057	Pt-HAC1.3
AT1G65440		GTB1	global transcription factor gr...		Potri.006G031900 [exp]	12.96	0.8410

Compare expression of checked genes

Potri.010G021400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.