Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18610 780 / 0 Protein kinase superfamily protein (.1.2) AT5G13160 597 / 0 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT5G02800 546 / 0 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT1G07870 516 / 0 Protein kinase superfamily protein (.1.2) AT3G20530 491 / 2e-172 Protein kinase superfamily protein (.1) AT2G28590 481 / 5e-168 Protein kinase superfamily protein (.1) AT3G07070 477 / 2e-166 Protein kinase superfamily protein (.1) AT3G24790 474 / 3e-166 Protein kinase superfamily protein (.1) AT4G13190 468 / 3e-163 Protein kinase superfamily protein (.1) AT1G20650 464 / 8e-162 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G205700 [exp] 932 / 0 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G166900 [exp] 653 / 0 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.001G060800 [exp] 647 / 0 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.010G215100 [exp] 587 / 0 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G046500 [exp] 577 / 0 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G133300 [exp] 558 / 0 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 509 / 1e-179 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.009G026500 [exp] 506 / 6e-178 AT1G07870 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.011G137000 [exp] 496 / 2e-174 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033966 [exp] 809 / 0 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012814 [exp] 793 / 0 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10015756 [exp] 631 / 0 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10041426 [exp] 567 / 0 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036499 [exp] 565 / 0 AT5G18610 575 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040350 [exp] 563 / 0 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023473 [exp] 560 / 0 AT5G18610 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019897 [exp] 511 / 2e-180 AT5G02800 533 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10014019 [exp] 509 / 2e-178 AT5G02800 532 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10011866 [exp] 486 / 1e-169 AT3G07070 556 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.010G021500.2 pacid=42797875 polypeptide=Potri.010G021500.2.p locus=Potri.010G021500 ID=Potri.010G021500.2.v4.1 annot-version=v4.1 ATGGGTGGGTGTTTTCCTTGTTTTGGGTCATCAAACAAGGAGGGTAGTAGTGGTGTTGGTCTTGTTAAAGAATTGAACAACAAGGATTCACTTAAAGAAG GTTCAGCTGGTCAGTCTCACCATGTTGGCAGAGTTAGTTCAGACAAATCAAAATCTCGGAGTGGTTCTGATCCTAAGAAGGAACAATCAATTCCCAAAGA TGGACCAACAGCTAACATTGCAGCACAGATATTTACATTCCGAGAATTAGCTGCTGCCACAAAGAACTTTAGACCAGAGTGCTTGTTAGGTGAAGGGGGT TTTGGGCGTGTTTACAAAGGTCGCATTGAGAGCACTGGCCAGGTAGTTGCTGTGAAACAGCTTGACCGAAATGGCCTTCAAGGAAATAGAGAATTTCTGG TGGAGGTTCTCATGCTCAGCCTCTTACACCATCCAAACCTTGTCAACTTGATTGGCTACTGTGCTGATGGGGACCAACGCCTCCTTGTTTATGAGTTTAT GCCATTGGGATCATTGGAGGATCATTTACATGATCTTCCCCCGGGCAAAGAGCCTCTGGACTGGAACACAAGGATGAAGATTGCAGCTGGTGCGGCTAAG GGATTGGAATACTTGCATGATAAAGCAAACCCTCCTGTCATATACCGGGACTTAAAATCATCCAACATCCTTCTTGATGAGGGTTATCATCCCAAGTTGT CAGATTTCGGACTTGCAAAGCTAGGTCCTGTTGGTGACAAGACACATGTCTCAACACGTGTGATGGGGACATATGGTTATTGTGCTCCAGAGTATGCCAT GACTGGCCAACTTACTTTAAAGTCTGATGTCTATAGTTTTGGGGTTGTCTTTCTTGAACTTATCACAGGGCGCAAGGCAATTGATAACACCCGGGATCCT GGAGAGCATAATCTAGTTGCATGGGCAAGACCACTTTTCAAGGATCGTAGGAAATTCCCTAAAATGGCTGATCCACTGCTTCAAGGCCGTTATCCAATGC GAGGACTGTATCAAGCTCTTGCGGTTGCAGCTATGTGTTTGCAAGAGCAGGCTGCTACAAGGCCTCTAATAGGCGATGTTGTGACTGCTCTCACATATTT AGCTTCCCAAACCTATGACCCAAATGCTGTCAATCAAAGTAACAGAGTCGGACCATCTACACCTAGGAACAGAGATGATCGGAGGGGAATGGCTGATGGG CTGGATAGCCCAGACGAGCATGGACGTGGTGGGCGAAATGGTTCCCCTTCCACTTACAAAAACTCACCTGATTATAGGAAACGGGACCATGTTAGGGAAT TCAGCACTGGTGCAGAATTAGGAAGGAGTGAAACAGGTGGATCTGGCAGAAAATGGGGTTTGGATGACTCAGACCAACAGGATTCTCAGAGAGATAGTCC TGTGAGTACCAGCAGAGCAAGGGAAACTCCAAGAAATCGTGATTTAGATAGAGAACGAGCGGTTGCAGAAGCAAAAGTATGGGGTGAAAATTGGAGAGAG AAAAGGCGGGCGAATGCGATGGGTAGTTTTGATGGTACAAACGAGTGA
AA sequence Show only first row Show all	>Potri.010G021500.2 pacid=42797875 polypeptide=Potri.010G021500.2.p locus=Potri.010G021500 ID=Potri.010G021500.2.v4.1 annot-version=v4.1 MGGCFPCFGSSNKEGSSGVGLVKELNNKDSLKEGSAGQSHHVGRVSSDKSKSRSGSDPKKEQSIPKDGPTANIAAQIFTFRELAAATKNFRPECLLGEGG FGRVYKGRIESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPGKEPLDWNTRMKIAAGAAK GLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRDP GEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAVNQSNRVGPSTPRNRDDRRGMADG LDSPDEHGRGGRNGSPSTYKNSPDYRKRDHVREFSTGAELGRSETGGSGRKWGLDDSDQQDSQRDSPVSTSRARETPRNRDLDRERAVAEAKVWGENWRE KRRANAMGSFDGTNE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18610			Protein kinase superfamily pro...		Potri.010G021500 [exp]	0	1
AT1G51745			Tudor/PWWP/MBT superfamily pro...		Potri.003G045600 [exp]	8.36	0.6864
AT4G30230			unknown protein		Potri.006G168400 [exp]	9.48	0.7409
AT5G61820			unknown protein		Potri.012G110300 [exp]	10.39	0.7655
AT1G09230			RNA-binding (RRM/RBD/RNP motif...		Potri.019G031700 [exp]	16.12	0.7632
AT5G44070		ATPCS1, ARA8, C...	CADMIUM SENSITIVE 1, ARABIDOPS...		Potri.014G195900 [exp]	25.45	0.7243
AT5G64160			unknown protein		Potri.001G206032 [exp]	31.49	0.7538
					Potri.001G194901 [exp]	37.37	0.7408
AT4G10925			Nuclear transport factor 2 (NT...		Potri.003G141600 [exp]	41.53	0.6975
AT1G73930			unknown protein		Potri.015G049900 [exp]	47.32	0.6553
					Potri.018G035750 [exp]	47.95	0.6702

Compare expression of checked genes

Potri.010G021500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.