Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18590 811 / 0 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT3G05420 224 / 1e-63 ACBP4 acyl-CoA binding protein 4 (.1.2) AT5G27630 219 / 6e-62 ACBP5 acyl-CoA binding protein 5 (.1) AT5G04420 197 / 4e-55 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT1G18610 95 / 3e-20 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G74150 92 / 4e-19 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G07720 87 / 4e-18 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G36360 85 / 4e-17 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) AT3G16400 76 / 3e-14 ATNSP1, ATMLP-470 MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-470, nitrile specifier protein 1 (.1.2) AT3G16410 76 / 5e-14 NSP4 nitrile specifier protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G214900 [exp] 1179 / 0 AT5G18590 819 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.013G018800 [exp] 224 / 2e-63 AT3G05420 999 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.005G026900 [exp] 221 / 2e-62 AT3G05420 1005 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.010G230300 [exp] 209 / 2e-59 AT5G04420 657 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.008G031200 [exp] 204 / 1e-57 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.005G013000 [exp] 109 / 1e-24 AT1G18610 172 / 2e-46 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G008200 [exp] 108 / 3e-24 AT1G74150 200 / 3e-56 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.015G059400 [exp] 91 / 5e-19 AT1G18610 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.012G062100 [exp] 87 / 1e-17 AT1G18610 631 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034163 [exp] 862 / 0 AT5G18590 785 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10043420 [exp] 779 / 0 AT5G18590 611 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10031497 [exp] 225 / 9e-64 AT3G05420 1027 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10029902 [exp] 224 / 2e-63 AT3G05420 1040 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10015176 [exp] 218 / 2e-61 AT3G05420 1024 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10004499 [exp] 205 / 2e-56 AT3G05420 1019 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10037933 [exp] 198 / 7e-55 AT5G04420 648 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10038666 [exp] 193 / 1e-53 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10028825 [exp] 187 / 1e-51 AT5G04420 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10017457 [exp] 186 / 5e-51 AT5G04420 610 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF01344 [poplar] [flax] Kelch_1 Kelch motif CL0186 [poplar] [flax] Beta_propeller PF13418 [poplar] [flax] Kelch_4 Galactose oxidase, central domain
Representative CDS sequence Show only first row Show all	>Potri.010G022000.5 pacid=42797602 polypeptide=Potri.010G022000.5.p locus=Potri.010G022000 ID=Potri.010G022000.5.v4.1 annot-version=v4.1 ATGTTTGGTTTCTCTAAAAGACGCACAAAACTTGGCAGGGTCAAGAAGGTGCAACTCTCTGATTCTACACCAGGGATTAGAAGTCCTATTAGACCCCCAA AGCGAATTATTAGTAGTAATAATGCCAATAGTGAAGGTGTTGCACTTACAACTAATAATTCTGACGAGCTTGATTACAATTGCTCCTCTTCTGCTCCGCT GGATATCAGTGCCTCTACATCAGGGAATGCTGAGAACTGGATGGTGTTGTCGATTTCTGGGGACGAACCTACTCCTCGTTTCAACCATGCAGCAACCGTC ATTGGGAACAAGATGATAGTGGTTGGTGGAGACTCTGGAAGTGGATTGTTAGATGATGTACAGGTGCTGAAATTTGACCAATTCACGTGGACTACAATTT CATCAAAGCTTTACTTGTCACCCAGCAGTTTGCCATTGAAGATCCCTGCATGCAGAGGCCACTGTCTGGTTTCTTGGGGGAAGAAGGCACTTCTTATTGG AGGAAAAACTGATCCTGCTAGTGACCGAATTTCTGTGTGGGCATTTCACACAGAAACAGAGTGTTGGTCAATCATTGAAGCAAAGGGAGACATTCCGATT GCCCGCTGTGGTCATACAGTGGTCCGAGCAAGCTCTGTTTTAATTTTATTTGGGGGTGAAGATGCTAAAAGGAAGAAATTAAATGATCTGCACATGTTTG ATCTCAAATCTTTCACTTGGCTTCCTCTGCATTGCACAGGAACCGGACCGTCTCCAAGAACCAACCATGTAGCAGCTCTTTATGATGATAAAATTCTACT TATATTTGGAGGAACATCCAAGTCCCGGACTCTGAATGACTTGTATTCACTTGATTTTGAAACGATGGTATGGTCGAGAACAAAGATACGAGGCTTCCAT CCATCACCTAGGGCTGGGTGCTGTGGAGTTTTATGCGGAACTAAATGGTACATAGCGGGGGGAGGAACTAGGAAAAAACGGCACTCAGAAACTTTCATTT TTGATATCTTGAAAGTGGAGTGGTCAGTGGCATTTCCATCACCCTCATCTTCTATTACTACCAACAAGGGATTTAGCCTGGTACTTGTGCAGCACAAGGA AAAGGATTTCCTTGTTGCTTTTGGTGGAAGCAAAAAGGAGCCATCAAATCAGGTTGAAGTGATGGGCATTGAGAAGAATGAATCATCAATGGGTCGTCAT TCTGCTCCTAGTGAAGGCCCTAGAAATTTGCTGTTAGAAAAGTGCTCATCGTCTACAGTGTTGGCTGATCAACTTGGTACCGGCTCTTCTCAGCATTCAG TTGATTCCATTACAAGACAAAATTTGGTATCTGCAATTGAACAGCATGGTTCTGGTAGGAAATCTTTGTCAGAGTCCTTGCTTGTTGATCCAAATTCTGC TTCCGGAAATGTCTCTCGTCGCAAGGACTTTCACCACAAGGAAGAAAACACCACGGCTGCTAAGACAGCAAAGAACTTAGATGGAAATTTTGCATCACTG GCCACTGAACTCCAAAGAAATCATTCTGATGTATCAGTCCAGCCTAACAATCCATTTGGTAAAATTAATGCTGAGGAGATGTCTTGCGTATTTCAAATGG AAACTTCTAACTCTCACAACCAAGGAACTGGAAACCTTTCAATTGATAATGAGGATGTACCATTACCAGAGAGTGATTGTACAACAGGAGGGGCTCGTGC AAGTATATATCGATTGTATGAAACAAAAATAGCTGCTCTAACAAGAAAGAACAGAGTACTTGAAGGACAACTGGCAGCTGCATTTATCGGTCGAGAAGCA GCAGAGAAAAATGTATCCTCTGCCCTGAAGAGCAGACAGGAAATGGAGAAAAAGTTGGTAGACACAGTGAGGGAGATGGAGTTGTTGAAAGAAAAGCTGG CTTGTGTAGAGCTAGCTCAAGAAGAGGCCAACAGCTTATCAAATATTGTCCATTCGGACAATCTAAGGCTTGAGCATGATGTGGCTTTCCTGAAGGCTGT TTTGGATGATACTCAGAAGGAGTTGCATTCGACTAGGGGAGTCCTTTCTGGGGAAAGGGCAAGAGCATTCCAACTACAGATTGAAGTTTTTCATCTCAAA CAAAGATTGCAATCTATGGAAAACCGAACGCCTACACCAAGAAAGCCATTCCATGTGCACTGA
AA sequence Show only first row Show all	>Potri.010G022000.5 pacid=42797602 polypeptide=Potri.010G022000.5.p locus=Potri.010G022000 ID=Potri.010G022000.5.v4.1 annot-version=v4.1 MFGFSKRRTKLGRVKKVQLSDSTPGIRSPIRPPKRIISSNNANSEGVALTTNNSDELDYNCSSSAPLDISASTSGNAENWMVLSISGDEPTPRFNHAATV IGNKMIVVGGDSGSGLLDDVQVLKFDQFTWTTISSKLYLSPSSLPLKIPACRGHCLVSWGKKALLIGGKTDPASDRISVWAFHTETECWSIIEAKGDIPI ARCGHTVVRASSVLILFGGEDAKRKKLNDLHMFDLKSFTWLPLHCTGTGPSPRTNHVAALYDDKILLIFGGTSKSRTLNDLYSLDFETMVWSRTKIRGFH PSPRAGCCGVLCGTKWYIAGGGTRKKRHSETFIFDILKVEWSVAFPSPSSSITTNKGFSLVLVQHKEKDFLVAFGGSKKEPSNQVEVMGIEKNESSMGRH SAPSEGPRNLLLEKCSSSTVLADQLGTGSSQHSVDSITRQNLVSAIEQHGSGRKSLSESLLVDPNSASGNVSRRKDFHHKEENTTAAKTAKNLDGNFASL ATELQRNHSDVSVQPNNPFGKINAEEMSCVFQMETSNSHNQGTGNLSIDNEDVPLPESDCTTGGARASIYRLYETKIAALTRKNRVLEGQLAAAFIGREA AEKNVSSALKSRQEMEKKLVDTVREMELLKEKLACVELAQEEANSLSNIVHSDNLRLEHDVAFLKAVLDDTQKELHSTRGVLSGERARAFQLQIEVFHLK QRLQSMENRTPTPRKPFHVH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18590			Galactose oxidase/kelch repeat...		Potri.010G022000 [exp]	0	1
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Potri.018G086300 [exp]	4.89	0.7461	HBT.2
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Potri.003G107700 [exp]	15.19	0.7363
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Potri.018G047500 [exp]	15.81	0.7412
AT2G01630			O-Glycosyl hydrolases family 1...		Potri.010G108500 [exp]	23.87	0.6833
AT4G34440		AtPERK5	proline-rich extensin-like rec...		Potri.004G153600 [exp]	24.91	0.6948
AT2G32070			Polynucleotidyl transferase, r...		Potri.018G036050 [exp]	29.49	0.7166
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Potri.001G346000 [exp]	30.44	0.7267
					Potri.012G087601 [exp]	35.32	0.6824
AT5G61820			unknown protein		Potri.012G110600 [exp]	35.62	0.6735
AT3G48470		EMB2423	embryo defective 2423 (.1)		Potri.015G090700 [exp]	36.26	0.7328

Compare expression of checked genes

Potri.010G022000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.