Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39090 748 / 0 APC7, AtAPC7 anaphase-promoting complex 7, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) AT3G48150 63 / 4e-10 CDC23, APC8 anaphase-promoting complex subunit 8 (.1) AT3G16320 56 / 6e-08 CDC27a Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39470 43 / 0.0004 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G215100 [exp] 961 / 0 AT2G39090 752 / 0.0 anaphase-promoting complex 7, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.012G075000 [exp] 69 / 4e-12 AT3G48150 957 / 0.0 anaphase-promoting complex subunit 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034164 [exp] 842 / 0 AT2G39090 801 / 0.0 anaphase-promoting complex 7, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10043419 [exp] 795 / 0 AT2G39090 756 / 0.0 anaphase-promoting complex 7, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10004242 [exp] 74 / 2e-13 AT3G48150 895 / 0.0 anaphase-promoting complex subunit 8 (.1) Lus10042152 [exp] 73 / 2e-13 AT3G48150 904 / 0.0 anaphase-promoting complex subunit 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF07719 [poplar] [flax] TPR_2 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13181 [poplar] [flax] TPR_8 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.010G022100.1 pacid=42798107 polypeptide=Potri.010G022100.1.p locus=Potri.010G022100 ID=Potri.010G022100.1.v4.1 annot-version=v4.1 ATGGATGTGCCAAAGGATCAAATCACTGCTCTTCTCGATAACCAACTCTACAATTCCGCTCAAATTCTCGGTTGCTTTCTGGTTTCATCATCTACTGTTA GTCTCGAAACCAGCCCCCAGCTCAAAGCCGAAAATCAGATTCTTCTTGGAGATGCATTGTTTCGCGATAGAGAGTTTCGCAGAGCGATTCATACGTATAA GCAAGCATTGCATTACTGCAAGATAATTCCGAAACAGAGTTCGACAACTTCTAGGAGTTCATTGTCGAACAGGTCTTCTTCTCCGAATTCTTTTAACATT TCAGCAATTAATGAAAATGAGGTGAAGTTCAAGATCGCATCTTGCCATTCAGCAATGAATGAAACTAGAGCCGCACTTGTTGAGATGGAAGGAATTCCAA GCAAAGCAAGAACTTTACAAATGAGTTTATTGATGGCAAAGCTTTATAGAAGTTCAAGGCATACTCGCTTTGCTATCACTTGTTACAAAGAGTGCTTAAG GCATTGCCCTTTTGTCATTGAGGCTATCATAGCTTTGGCGGAACTGGGAGTTGCTGCCAAGGATATCATTTCACTTTTTTTACAGGCTTCAAATAGAAGT GGGCGAGCTCCACTTGATCATACTGACTCTACTCGCTGGGTTCAACGCTATGTTGAGGCCCAGTGTTGTATTGCTTCAAATGATTACAAAGGTGGTTTGG ATCTCTTTGCAGAACTCCTGCAACGTTTTCCTCATAACATACATGTATTACTTGAAATTGCAAAGGTTCAAGCCATAATTGGGAAGAATGATGAGGCCTT AATGAATTTTGAGAAGGTTCGATCAATTGATCCATACATTGTAACTTATATGGATGAGTATGCAATGCTTCTAAAGACAAAGGGTGATTTTTCAAAGCTA AACAAGTTGGTGCATGATTTGCTGAGTATTGATCCCACAAGGCCAGAAGTTTTTGTGGCTTTGTCTGTCCTGTGGGAAAAGAAAGATGAGAGAGGAGCGC TGTCTTATGCGGAGAAGAGCACCAGGATTGATGAGAGGCACATTCTGGGTTACATTATGAAGGGTACTTTGCTATTGTCACTAAAGCGGCCAGAAGCAGC TGTCATTGCTTTCAGGGGAGCTCAAGAATTGAGAGCTGATCTCCGCTCATATCAAGGTTTGGTTCATTCTTATTTGGCATTCTCCAAAATTAAAGAGGCC CTGCATGCGGCCAGGGAGGCAATGAAAGCCATGCCTCAGTCTGCAAAGGCTCTAAAATTAGTAGGGGATGTACATGCTAGTAACTCTGGTGGAAGAGAGA AGGCAAAAAAGTTCTACGAGTCAGCACTGAGGCTGGAACCTGGTTACCTTGGTGCAGCATTAGCTTTGGCTGAGCTTCATGTCATTGAGGGTCGAAATGG AGATGCTGTGTCTCTGCTAGAGCGATATCTCAAAGACTGGGCAGATGACTCTCTTCATGTCAAGTTGGCTCAAGTATTTGCTGCCACTAATATGCTGCAA GAGGCTATGTCACATTATCAGTCTGCATTAAGAATAAACCCACAGAATGAAGCTGCAAAAAAAGGGCTAGAGCGCTTGGAAAAACAGATGAAGGGGGTGG ATCCGGATGCACCTGAAGAAGATGAAGAAAATGAGATAGAAGATGCAGATGGAGACCAGGAAGAGACTGATCTTTTATAA
AA sequence Show only first row Show all	>Potri.010G022100.1 pacid=42798107 polypeptide=Potri.010G022100.1.p locus=Potri.010G022100 ID=Potri.010G022100.1.v4.1 annot-version=v4.1 MDVPKDQITALLDNQLYNSAQILGCFLVSSSTVSLETSPQLKAENQILLGDALFRDREFRRAIHTYKQALHYCKIIPKQSSTTSRSSLSNRSSSPNSFNI SAINENEVKFKIASCHSAMNETRAALVEMEGIPSKARTLQMSLLMAKLYRSSRHTRFAITCYKECLRHCPFVIEAIIALAELGVAAKDIISLFLQASNRS GRAPLDHTDSTRWVQRYVEAQCCIASNDYKGGLDLFAELLQRFPHNIHVLLEIAKVQAIIGKNDEALMNFEKVRSIDPYIVTYMDEYAMLLKTKGDFSKL NKLVHDLLSIDPTRPEVFVALSVLWEKKDERGALSYAEKSTRIDERHILGYIMKGTLLLSLKRPEAAVIAFRGAQELRADLRSYQGLVHSYLAFSKIKEA LHAAREAMKAMPQSAKALKLVGDVHASNSGGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQ EAMSHYQSALRINPQNEAAKKGLERLEKQMKGVDPDAPEEDEENEIEDADGDQEETDLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39090		APC7, AtAPC7	anaphase-promoting complex 7, ...		Potri.010G022100 [exp]	0	1
AT1G75850		VPS35B	VPS35 homolog B (.1)		Potri.005G242100 [exp]	2.23	0.6935
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Potri.010G245100 [exp]	4.89	0.7216	NTN2.2
AT1G67140		SWEETIE	SWEETIE, HEAT repeat-containin...		Potri.004G101250 [exp]	5.09	0.7569
AT3G08670			unknown protein		Potri.006G110700 [exp]	8.66	0.6984
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Potri.008G012600 [exp]	12.24	0.6602	Pt-NTN2.3
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Potri.013G048500 [exp]	15.09	0.6970	CHR923
AT4G35890			winged-helix DNA-binding trans...		Potri.007G063600 [exp]	15.87	0.6523
AT5G60690	HD	IFL1, REV	REVOLUTA, INTERFASCICULAR FIBE...		Potri.004G211300 [exp]	16.09	0.6866	Pt-HB1.7
AT5G62600		MOS14	modifier of snc1-1, 14, ARM re...		Potri.015G068600 [exp]	16.30	0.6611
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Potri.009G078700 [exp]	24.97	0.6805

Compare expression of checked genes

Potri.010G022100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.