Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18570 687 / 0 EMB3138, ATOBGL, CPSAR1, EMB269, ATOBGC EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) AT1G07615 147 / 1e-37 GTP-binding protein Obg/CgtA (.1) AT4G39520 68 / 5e-12 GTP-binding protein-related (.1) AT1G56050 66 / 3e-11 GTP-binding protein-related (.1) AT1G30580 66 / 4e-11 GTP binding (.1) AT1G17470 65 / 6e-11 ATDRG1 developmentally regulated G-protein 1 (.1.2) AT1G72660 65 / 6e-11 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT5G57960 62 / 5e-10 GTP-binding protein, HflX (.1) AT1G80770 54 / 2e-07 PDE318 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G029600 [exp] 190 / 6e-53 AT5G18570 144 / 7e-37 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Potri.001G239600 [exp] 157 / 4e-41 AT1G07615 511 / 3e-178 GTP-binding protein Obg/CgtA (.1) Potri.007G080900 [exp] 69 / 4e-12 AT4G39520 647 / 0.0 GTP-binding protein-related (.1) Potri.001G457900 [exp] 67 / 2e-11 AT1G56050 663 / 0.0 GTP-binding protein-related (.1) Potri.001G170300 [exp] 66 / 3e-11 AT1G72660 677 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.003G063500 [exp] 66 / 4e-11 AT1G72660 678 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.011G164000 [exp] 64 / 9e-11 AT1G30580 691 / 0.0 GTP binding (.1) Potri.001G465900 [exp] 64 / 1e-10 AT1G30580 681 / 0.0 GTP binding (.1) Potri.002G134900 [exp] 53 / 5e-07 AT1G80770 576 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043418 [exp] 746 / 0 AT5G18570 724 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10034166 [exp] 672 / 0 AT5G18570 647 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10024297 [exp] 196 / 2e-55 AT5G18570 171 / 2e-46 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10016548 [exp] 157 / 3e-41 AT1G07615 511 / 1e-178 GTP-binding protein Obg/CgtA (.1) Lus10040813 [exp] 132 / 2e-33 AT1G07615 293 / 1e-95 GTP-binding protein Obg/CgtA (.1) Lus10006128 [exp] 70 / 8e-14 AT5G18570 62 / 5e-12 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10005800 [exp] 67 / 1e-11 AT4G39520 682 / 0.0 GTP-binding protein-related (.1) Lus10006801 [exp] 67 / 2e-11 AT4G39520 655 / 0.0 GTP-binding protein-related (.1) Lus10031209 [exp] 66 / 5e-11 AT1G56050 630 / 0.0 GTP-binding protein-related (.1) Lus10023261 [exp] 65 / 7e-11 AT1G30580 711 / 0.0 GTP binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01018 [poplar] [flax] GTP1_OBG GTP1/OBG CL0023 [poplar] [flax] P-loop_NTPase PF01926 [poplar] [flax] MMR_HSR1 50S ribosome-binding GTPase CL0023 [poplar] [flax] PF09269 [poplar] [flax] DUF1967 Domain of unknown function (DUF1967)
Representative CDS sequence Show only first row Show all	>Potri.010G022400.1 pacid=42799130 polypeptide=Potri.010G022400.1.p locus=Potri.010G022400 ID=Potri.010G022400.1.v4.1 annot-version=v4.1 ATGGCTTCCATATCCACAATAACCACCTCCTCCTTTCTTTCTCTCCAAGCAATTTCCCGCCCTAAATCCCCAAAATCTAACCCTATCCCTAGCAAAGCCT CACCAAGAAACCCTAATTCCAACCGAAACCGCAAGCTCAAACCTCAAAAGGCCAAATTCAAATCCCCGCCTCAGACAATCACTTCCACCGCCGGAGAAGC CACTAGTTACACTTGCTTACCTCCTCTAGAAGACTTCACAGTCCCGTCGTTGAACCTCGGATCTAGACCACCAGAAGAAATCAAGCTCTCTGATGCTAAT GTAGTCAAACAGGATAGTGACAGTGAATCGCAGCGTTTTGGGACCGAAGATGGAATGGATGGTGATTTACGTGTGGATTACGGGCGATTTGAAGTTAATA CACATTTCGAAGAGGAAGAGGAAGAGGACGCGGATTATGAGTATGAAAGCGAGGAGGAGGAGGAGGAGGAAGAAGAAACAGTGAATGGCAAAAGTGTTAA TAGTTATAATAGTGATGGTTTTTATGAAGGAGAAGAGTTGGGGGAGTTTGCTGACGGAGAGAATGTGAGTTTGTCAGATTTCGAGGGTGAAGAAGAAGGT GTGAAGGAGAAGGGAGTGCCGGCTGTAATGCGGTGTTTTGACCGGGCGAAAATCTATGTCAAAGCCGGAGATGGTGGGAATGGAGTGGTGGCTTTTCGGC GCGAGAAATTTGTGCCACTGGGAGGACCGTCGGGAGGGGATGGAGGGAGAGGAGGGAACGTGTATCTAGAAGTTGATGGCTCGATAAATTCTTTATTGCC ATTTAGGAATAGAGTGCATTATAGGGCGGGGAGAGGGTCTCACGGTCAAGGGTCATGCATGGGTGGAGCGAAAGGAGAGGAAATCGTGGTGAAAGTGCCG CCGGGGACGGTTGTTAGGGAGGCTGGGAATGAGGAGGTTTTGTTGGAGTTGTTGTCTCCAGGACAAAGGGCTTTGGTTTTGCCTGGTGGGAGAGGCGGGA GAGGGAATGCTGCATTTAAGTGTGGGAGTAATAAGGTACCTAGGATTGCCGAAAATGGTGAAGAGGGTTCGGAAATGTGGTTGGAGCTGGAGCTAAAGCT GGTCGCTGATGTTGGAATAGTGGGTGCTCCAAATGCTGGGAAAAGCACACTTTTGAGTGTCATAAGTGCTGCACAGCCAGCAATAGCGAATTATCCTTTT ACTACTCTGCTTCCTAACCTGGGTGTAGTTTCATTTGATTATGACTCTACAATGGTAGTAGCAGACCTTCCAGGTTTACTTGAAGGAGCACATCGGGGTT TTGGCCTAGGTCACGAGTTTCTACGACACACAGAAAGGTGTTCTGCCCTGGTACATGTTGTTGATGGATCTTCACAGCAGCCAGAATTCGAATTTGATGC TGTTCGTCTTGAGCTGGAAATGTTTAGTCCTGAACTTGCGGAGAAGCCTTATGTAGTTGCCTATAACAAAATGGACCTTCCAGAGGCATATGAAAACTGG CAGTTATTCAAGGAAAAGCTAGAAGCACGTGGGATTGAGACTTTTTGCATGAGTGCTGTCAAGAGAGAAGGGACACATGAAGTGATTTGTGCTGCTCATA AGCTTCTGCAAGAAAGTAAAGAAGCCAATAAGGGGTCTGAAGGTTGGACCCATCCGATAAATTTGAATCATGTAGCTGATATGGTACAAAGGCAGCGAAG AGCTCCTATTAATGACTTTGAAATCTCTTATGACAATGCGTCTAAAACATGGCAAGTAGTTGGGGCTGGATTGCAACGTTTTGTTCAGATGACAAATTGG CGGTATAAAGATTCTGACACAAGATTCCAACATGTGTTGGAGGCTTGTGGCGTGAACAAGTCACTCTTGAAGATGGGAGTCAAGGAAGGTGACACTGTGA TTGTTGGAGAGATGGAAATGGTGTGGCATGACTATCCTCAGAGTTCTGGTCTATCGAAAGTGACCAAATGGCCAGAGTGGAAGTAA
AA sequence Show only first row Show all	>Potri.010G022400.1 pacid=42799130 polypeptide=Potri.010G022400.1.p locus=Potri.010G022400 ID=Potri.010G022400.1.v4.1 annot-version=v4.1 MASISTITTSSFLSLQAISRPKSPKSNPIPSKASPRNPNSNRNRKLKPQKAKFKSPPQTITSTAGEATSYTCLPPLEDFTVPSLNLGSRPPEEIKLSDAN VVKQDSDSESQRFGTEDGMDGDLRVDYGRFEVNTHFEEEEEEDADYEYESEEEEEEEEETVNGKSVNSYNSDGFYEGEELGEFADGENVSLSDFEGEEEG VKEKGVPAVMRCFDRAKIYVKAGDGGNGVVAFRREKFVPLGGPSGGDGGRGGNVYLEVDGSINSLLPFRNRVHYRAGRGSHGQGSCMGGAKGEEIVVKVP PGTVVREAGNEEVLLELLSPGQRALVLPGGRGGRGNAAFKCGSNKVPRIAENGEEGSEMWLELELKLVADVGIVGAPNAGKSTLLSVISAAQPAIANYPF TTLLPNLGVVSFDYDSTMVVADLPGLLEGAHRGFGLGHEFLRHTERCSALVHVVDGSSQQPEFEFDAVRLELEMFSPELAEKPYVVAYNKMDLPEAYENW QLFKEKLEARGIETFCMSAVKREGTHEVICAAHKLLQESKEANKGSEGWTHPINLNHVADMVQRQRRAPINDFEISYDNASKTWQVVGAGLQRFVQMTNW RYKDSDTRFQHVLEACGVNKSLLKMGVKEGDTVIVGEMEMVWHDYPQSSGLSKVTKWPEWK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Potri.010G022400 [exp]	0	1
AT1G70070		ISE2, EMB25, PD...	PIGMENT DEFECTIVE 317, INCREAS...		Potri.010G038500 [exp]	1.00	0.9814
AT3G59040			Tetratricopeptide repeat (TPR)...		Potri.001G220300 [exp]	1.73	0.9764
AT1G74850		PDE343, PTAC2	PIGMENT DEFECTIVE 343, plastid...		Potri.015G069100 [exp]	2.00	0.9783
AT2G31170		FIONA, SYCOARAT...	cysteinyl t-RNA synthetase, FI...		Potri.018G024300 [exp]	3.46	0.9660
AT3G23070		ATCFM3A	CRM family member 3A (.1)		Potri.010G077100 [exp]	4.00	0.9758
AT3G57180		BPG2	BRASSINAZOLE\(BRZ\) INSENSITIV...		Potri.006G044700 [exp]	4.89	0.9717
AT5G03900			Iron-sulphur cluster biosynthe...		Potri.004G090400 [exp]	5.47	0.9721
AT1G36320			unknown protein		Potri.005G170400 [exp]	5.83	0.9537
AT1G49380			cytochrome c biogenesis protei...		Potri.009G111692 [exp]	6.92	0.9706
AT1G06730			pfkB-like carbohydrate kinase ...		Potri.005G220400 [exp]	7.07	0.9680

Compare expression of checked genes

Potri.010G022400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.