Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18550 421 / 1e-144 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G06410 402 / 5e-137 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G47850 390 / 1e-132 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) AT1G04990 219 / 6e-67 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT3G02830 184 / 2e-53 C3HZnF ZFN1 zinc finger protein 1 (.1) AT5G16540 176 / 1e-50 C3HZnF ZFN3 zinc finger nuclease 3 (.1.2.3) AT2G32930 137 / 1e-35 C3HZnF ZFN2 zinc finger nuclease 2 (.1.2) AT5G63260 134 / 1e-34 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT3G12680 130 / 1e-32 C3HZnF HUA1 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1) AT3G48440 128 / 2e-32 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G215700 [exp] 641 / 0 AT5G18550 397 / 8e-135 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.013G086800 [exp] 326 / 9e-108 AT3G02830 542 / 0.0 zinc finger protein 1 (.1) Potri.014G159500 [exp] 238 / 2e-73 AT1G04990 312 / 6e-103 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.002G223700 [exp] 220 / 1e-66 AT1G04990 340 / 8e-114 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.019G053200 [exp] 202 / 9e-60 AT3G02830 527 / 0.0 zinc finger protein 1 (.1) Potri.015G089100 [exp] 132 / 1e-33 AT5G63260 373 / 9e-126 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.010G176300 [exp] 129 / 3e-32 AT3G12680 578 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1) Potri.008G080300 [exp] 127 / 5e-32 AT3G12680 544 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1) Potri.012G092500 [exp] 122 / 3e-30 AT5G63260 362 / 2e-121 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033962 [exp] 512 / 6e-180 AT5G18550 456 / 7e-158 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10002880 [exp] 498 / 2e-174 AT5G18550 457 / 3e-158 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10007941 [exp] 352 / 2e-117 AT2G47850 524 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10013476 [exp] 346 / 2e-115 AT2G47850 532 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10035248 [exp] 340 / 5e-113 AT2G47850 490 / 8e-172 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10034620 [exp] 325 / 6e-108 AT2G47850 479 / 2e-168 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10020196 [exp] 283 / 6e-91 AT3G02830 510 / 0.0 zinc finger protein 1 (.1) Lus10026996 [exp] 261 / 1e-82 AT3G02830 508 / 3e-180 zinc finger protein 1 (.1) Lus10035330 [exp] 219 / 6e-66 AT1G04990 335 / 1e-111 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10031528 [exp] 147 / 4e-41 AT1G04990 204 / 2e-63 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [poplar] [flax] CCCH_zf PF00642 [poplar] [flax] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Potri.010G022500.1 pacid=42798735 polypeptide=Potri.010G022500.1.p locus=Potri.010G022500 ID=Potri.010G022500.1.v4.1 annot-version=v4.1 ATGGACCGGTACGGTCGGGGGCAAGAAGGCTCACAATCCGATCCGGCACAAGAATGGACGGGTTCAGGACAGGAAACCGGACTTGAAGAGGGTGTTTGGC AATTGGAAATAGGGGAAACAGAATCGGAATACCCGGAAAGACCTAATGAGCAAGATTGCATGTATTACTTGAGGACCGGGTTTTGCGGGTACGGAGCTAG GTGTCGGTATAATCATCCACGTGACCGGACTGCGGTATTGGGAGCTGCGAGGGCTGGTGGAGGGGAGTTTCCTGAACGAGTGGGCCAGCCTCTTTGCCAG TATTATATGCGGACAGGGACATGTAAATTTGGTGCTTCCTGCAAGTACAACCATCCTAAACAGGGAGGCAGTTCTGTTAGACCCGTGTCACTAAATTATT ACGGATACCCATTACGCCCGGGTGAAAGGGAATGTACATACTACATTAAAACAGGGCAGTGTAAGTTTGGGGCAACATGCAAATTCCACCATCCACAGCC AGCTAACATGCAAATTCCAGCACAATCACTGGCTCCACAAGTTGCATCGGTGCCTGCCCATACTTTATATCCTACAATGCAATCTCCGTCTGTTCCTTCA TCTCAACAGTATGGTGTAATGGTTGCAAGGCCTCCTCTGCTACCAGGCTCCTATGTACAAGGTCCTTATGGTCCCGTGTTGCTTTCCCCAAGCTTAGTTC CCTATCCAAGTTGGAGTCCATACCCGGCACCTGTAAGTCCAGTAGCCTCTCCTAATGCTCAGCCTGCTGTTGGCTCAGGATCAGTCTATGGAATATCACC ACTATCTCCTTCTGCACCTGCTTATACAGGAGCATATCAATCCATACCTACTGCAAAAGGTCCTTCTAGCAGTTCCCAGAAGGAACACGTGTTTCCAGAG AGACCTGGCCAGCCAGAATGTCAGTATTACATGAAAACTGGCGATTGTAAATTCGAATCCTCGTGTAGATATCATCATCCCCCAGAATTGGTCACATCAA AAACAAATGTTGTTCTTAGCCCCATGGGCCTTCCTCTACGCCCAGGTGCGCCAACTTGTACTCACTACACACAACATGGACAATGCAAGTTTGGGCCTGC ATGCAAATTCGACCATCCAATGGGAACACTGAGTTACAGTCCATCTGCATCTTCTCTTGCTGACATGCCAGTTGCGCCCTATCCAGTGGGATCTTCAATT GGCACTCTGGCCCCATCATCCTCATCTTCAGATATGCGGTCCAAACCCAGCAAGGACTCCAGTTCAACCAGGTTGTCTTCGTCAACAAGCACACCTAGCG GATCAGTTGGTTCAAAATATTCAAAGAGTGGACCCGCTTCTCATTCGAGCGTTCAAAAGTCAGGTCCTTAA
AA sequence Show only first row Show all	>Potri.010G022500.1 pacid=42798735 polypeptide=Potri.010G022500.1.p locus=Potri.010G022500 ID=Potri.010G022500.1.v4.1 annot-version=v4.1 MDRYGRGQEGSQSDPAQEWTGSGQETGLEEGVWQLEIGETESEYPERPNEQDCMYYLRTGFCGYGARCRYNHPRDRTAVLGAARAGGGEFPERVGQPLCQ YYMRTGTCKFGASCKYNHPKQGGSSVRPVSLNYYGYPLRPGERECTYYIKTGQCKFGATCKFHHPQPANMQIPAQSLAPQVASVPAHTLYPTMQSPSVPS SQQYGVMVARPPLLPGSYVQGPYGPVLLSPSLVPYPSWSPYPAPVSPVASPNAQPAVGSGSVYGISPLSPSAPAYTGAYQSIPTAKGPSSSSQKEHVFPE RPGQPECQYYMKTGDCKFESSCRYHHPPELVTSKTNVVLSPMGLPLRPGAPTCTHYTQHGQCKFGPACKFDHPMGTLSYSPSASSLADMPVAPYPVGSSI GTLAPSSSSSDMRSKPSKDSSSTRLSSSTSTPSGSVGSKYSKSGPASHSSVQKSGP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18550	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.010G022500 [exp]	0	1
AT5G14540			Protein of unknown function (D...		Potri.001G348500 [exp]	3.00	0.7575
AT5G54430		ATPHOS32	Adenine nucleotide alpha hydro...		Potri.001G409100 [exp]	7.74	0.6800
AT3G01150		ATPTB1, PTB	polypyrimidine tract-binding p...		Potri.017G085400 [exp]	21.35	0.6838
AT4G26750		EXT-like	extensin-like, hydroxyproline-...		Potri.011G082000 [exp]	21.54	0.7410
AT4G08960			phosphotyrosyl phosphatase act...		Potri.002G099000 [exp]	22.13	0.7080
AT5G10010			unknown protein		Potri.005G083700 [exp]	22.36	0.6579
AT1G20110			RING/FYVE/PHD zinc finger supe...		Potri.002G018900 [exp]	27.27	0.7182
AT2G17200		DSK2	ubiquitin family protein (.1)		Potri.009G166000 [exp]	27.36	0.6023
AT2G41060			RNA-binding (RRM/RBD/RNP motif...		Potri.005G081600 [exp]	28.35	0.7119
AT3G06140			RING/U-box superfamily protein...		Potri.010G030600 [exp]	31.46	0.6018

Compare expression of checked genes

Potri.010G022500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.