Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CARB.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29900 1902 / 0 VEN3, CARB VENOSA 3, carbamoyl phosphate synthetase B (.1) AT1G36160 61 / 9e-09 GSD1, PAS3, GK, EMB22, AT-ACC1, ACC1 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) AT1G36180 59 / 2e-08 ACC2 acetyl-CoA carboxylase 2 (.1.2) AT5G35360 52 / 3e-06 CAC2 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) AT1G03090 52 / 4e-06 MCCA methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G216501 [exp] 265 / 4e-82 AT1G29900 219 / 2e-66 VENOSA 3, carbamoyl phosphate synthetase B (.1) Potri.018G146300 [exp] 61 / 3e-09 AT5G35360 911 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Potri.006G078200 [exp] 58 / 3e-08 AT5G35360 926 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Potri.002G092700 [exp] 57 / 7e-08 AT1G36160 3806 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Potri.005G169100 [exp] 57 / 1e-07 AT1G36160 3800 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Potri.005G213300 [exp] 51 / 4e-06 AT1G03090 1099 / 0.0 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016137 [exp] 1910 / 0 AT1G29900 1969 / 0.0 VENOSA 3, carbamoyl phosphate synthetase B (.1) Lus10021430 [exp] 1908 / 0 AT1G29900 1965 / 0.0 VENOSA 3, carbamoyl phosphate synthetase B (.1) Lus10028196 [exp] 61 / 4e-09 AT5G35360 892 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10006934 [exp] 60 / 1e-08 AT1G36160 3698 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Lus10024748 [exp] 60 / 2e-08 AT1G36160 2397 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Lus10017534 [exp] 57 / 5e-08 AT5G35360 892 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10028753 [exp] 57 / 7e-08 AT5G35360 888 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10042899 [exp] 49 / 2e-05 AT5G35360 821 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10042623 [exp] 46 / 0.0002 AT1G03090 1064 / 0.0 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02142 [poplar] [flax] MGS MGS-like domain CL0123 [poplar] [flax] HTH PF02787 [poplar] [flax] CPSase_L_D3 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CL0179 [poplar] [flax] ATP-grasp PF13535 [poplar] [flax] ATP-grasp_4 ATP-grasp domain
Representative CDS sequence Show only first row Show all	>Potri.010G023100.1 pacid=42797546 polypeptide=Potri.010G023100.1.p locus=Potri.010G023100 ID=Potri.010G023100.1.v4.1 annot-version=v4.1 ATGAACTGTTGCTTAAACCGTTACCACTGCTCTCACTCCCTCTCTTTCATCCACCAAAACAAAGCTTCCTCCTCCTCCTCCTCCTCCTTTTCTCTCTCAA AACCCAATCGTTTCCGCCTCTTCTTTTCGCAAACTAACTACCCGAGAAGAATCACCTCTTCTTCCTCCATTCGCTGCTGCAGCAGCATCGTCCGCCAAGA AACAGAGAAGAGGAGCGTGAAAACAGGGGCTGGAAAGCGCACCGACTTGAAGAAAATCTTGATTCTTGGTGCTGGACCCATTGTGATTGGTCAAGCATGC GAGTTCGATTACTCCGGTACTCAAGCATGCAAGGCTTTGCGAGAGGAAGGGTATGATGTTATTTTGATAAACTCCAACCCTGCCACTATCATGACTGACC CGGACTTGGCTGACCGCACTTATGTTGCGCCATTGACGCCGGAGGTCGTTGAACAGGTGGTGGCTAAAGAACGTCCCGATGCCATTTTGCCCACCATGGG AGGCCAGACAGCGTTGAATCTTGCTGTGGCTTTAGCGGCAAATGGGGTTTTAGAGAAATATAATGTTGAATTGATTGGAGCTAAACTGAATGCCATTAAA AAAGCTGAAGATAGAGATCTTTTCAAGCAGGCTATGGAGAATATAGGACTCAAAACTCCGCCTTCTGGCATTGGGAGCACGCTTGAGGAGTGCATTCGCA TATCGGAGGAAGTTATTGGGGAGTTTCCACTTATTATTCGGCCTGCTTTTACGTTGGGTGGCTCTGGAGGTGGGATTGCTTACAATAAAGAGGAGTTCGA GGCTATTTGTAAGGCAGGGTTAGCTGCTAGTTTAACCTCACAGGTTTTGGTGGAGAAGTCACTCTTGGGGTGGAAAGAGTACGAGTTAGAAGTAATGCGC GATTTGTCTGATAATGTTGTTATCATTTGCTCCATTGAGAATATTGATCCAATGGGTGTGCATACAGGGGATTCAATTACTGTTGCTCCTGCACAGACTC TGACTGACAAGGAGTACCAGAGGTTGAGAGATTATTCTATTAAGATTATAAGGGAGATTGGAGTGGAGTGTGGAGGATCTAATGTGCAGTTTGCTGTTAA TCCTGTGGATGGTGAGGTTATGGTGATTGAGATGAATCCTAGGGTGTCCAGGTCTTCTGCTCTGGCTTCCAAGGCTACTGGTTTTCCCATAGCCAAGATG GCTGCTAAGTTGTCGGTGGGGTATTCATTGGACCAGATTCCTAATGATATCACAAAGAAGACCCCTGCGAGTTTCGAGCCTTCTATTGACTATGTGGTGA CTAAGATCCCCCGATTTGCATTTGAGAAGTTCCCCGGTTCTCAGCCAACCCTTACAACCCAGATGAAATCTGTTGGTGAGTCCATGGCATTAGGCCGAAC ATTTCAAGAATCATTTCAAAAAGCTGTTCGATCATTGGAGTGTGGATACTCAGGATGGGGATGTGCGCAAGTTGCCGAACTTGACTGGGACTTGGAACAA TTGAAGTACAACCTCCGAGTTCCAAATCCTGATCGCATTCATGCCATTTATGCAGCAATGAAAAGGGGTATGAAAGTTGATGAAATCCATGAACTGAGCT TTGTGGATAAATGGTTCCTCACTCAGCTTAAAGAGCTGGTAGATGTGGAACAATATCTTATGACTAGGAGTTTGTCTCATCTGACAAAGGATGACTTCAT CGAGGTCAAAAAGCATGGCTACAGTGATAAGCAGATAGCATTTGCTATTAAATCAACAGAGAAGGAAGTCCGGTCACAACGGATTTCTTTTGGAGTTACT CCGTCGTATAAAAGGGTTGATACTTGTGCTGCAGAGTTTGAGGCCAATACTCCTTACATGTACTCCTCCTATGATGCAGAGTGTGAATCAGCTCCCACCA AAAAGAAGAAGGTTTTGATTTTAGGTGGAGGACCCAACCGTATAGGTCAGGGAATTGAGTTTGATTACTGTTGTTGCCATGCATCTTTTTCCCTGCAGAG TGCAGGATATGAGACAATTATGATGAATTCAAATCCTGAGACAGTGTCCACAGATTATGACACAAGCGATCGTCTCTACTTTGAACCCTTGACAGTTGAA GATGTTCTGAATGTAATTGAATTGGAAAGACCTGATGGGATCATTATACAGTTTGGAGGTCAAACACCCCTGAAGCTGGCTCTGCCCATCCAGCATTATT TGGACAAGCATAAGCCTCTTAGTGCCAGCGGAGCTGGGCATGTACGCATATGGGGCACATCACCTGATTCTATTGATGCTGCTGAGGACAGAGAAAGGTT CAATGTGATTATAAAAGAGTTAAACATTGAACAACCAAAAGGAGGCATTGCTAAGAGTGAGGCTGATGCTTTAGCCATTGCAGCAGACATAGGTTACCCA GTTGTTGTCCGTCCTTCTTATGTCTTAGGTGGCCGGGCAATGGAGATAGTATATAGTGATGACAAGCTTGTGAAGTATCTTGAAAATGCTGTTGAGGTGG ACCCACAACGCCCTGTGTTGATAGATAAATATTTATCTGATGCTGTTGAGATTGATGTGGATGCACTTGCAGACTCACATGGTGATGTGGTGATTGGTGG GGTAATGGAGCACATTGAGCAGGCTGGGGTCCATTCAGGTGACTCAGCTTGCATCCTTCCCACACAAACTATCTCATCTTCCTGCTTGAACACAATTCAG TTATGGACTACAAAGTTGGCAAAGAGTCTGAATGTTTGCGGTCTCATGAACTGCCAATACGCGATCACCATGGGTGGGGATGTTTTTCTGCTTGAGGCAA ATCCTCGTGCTTCTCGTACCATTCCATTTGTCTCAAAGGCAATTGGCCATCCACTAGCTAAATATGCCGCTCTTGTTATGTCCGGAAAGTCACTTAATGA GATAGGTTTCACAAAAGAGGTAATCCCAGCGCATGTTGCCGTCAAGGAAGCAGTTCTTCCATTTGATAAGTTCCCAGGCTGTGATGTGCTGTTAGGGCCT GAGATGAGGAGTACTGGTGAGGTAATGGGTATAGATTATCTGGTTGCGATTGCATTTGCCAAGGCTCAAATTGCTGCTGGGCAGAAGCTACCACTTTCTG GCACTGTGTTCCTTAGCTTAAATGACTTGACAAAATCCCATCTCGAACGGCTGGCAAAGGCCTTTTTAGGACTTGGCTTCAGGATTGTTTCGACTTCTGG AACAGCTCACTTTCTTGAATTGAAAGGCATCTCAGTGGATAGAGTGCTGAAGATGCACGAGGGACGGCCACATGCTGGTGATATTCTTGCTAATGGGCAA ATTCAATTGATGGTGATCACTAGTTCTGGTGATTCACTTGATCAAATTGATGGCCGGCAATTGAGGAGGATGGCACTTGCTTATAAAATTCCTATAATAA CGACAGTTTCTGGTGCTTTGGCAACAGCAAATGCAATTGAGAAATTAAAAACCTGCAAAATTGAAGTGATGGCCCTTCAAGACTTTTTTAATGTTGAGCC ACAGAAAGATGATAGTAAAAGTTTGCAGCCAGCATCTTCTTCTCTATGA
AA sequence Show only first row Show all	>Potri.010G023100.1 pacid=42797546 polypeptide=Potri.010G023100.1.p locus=Potri.010G023100 ID=Potri.010G023100.1.v4.1 annot-version=v4.1 MNCCLNRYHCSHSLSFIHQNKASSSSSSSFSLSKPNRFRLFFSQTNYPRRITSSSSIRCCSSIVRQETEKRSVKTGAGKRTDLKKILILGAGPIVIGQAC EFDYSGTQACKALREEGYDVILINSNPATIMTDPDLADRTYVAPLTPEVVEQVVAKERPDAILPTMGGQTALNLAVALAANGVLEKYNVELIGAKLNAIK KAEDRDLFKQAMENIGLKTPPSGIGSTLEECIRISEEVIGEFPLIIRPAFTLGGSGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMR DLSDNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIKIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKM AAKLSVGYSLDQIPNDITKKTPASFEPSIDYVVTKIPRFAFEKFPGSQPTLTTQMKSVGESMALGRTFQESFQKAVRSLECGYSGWGCAQVAELDWDLEQ LKYNLRVPNPDRIHAIYAAMKRGMKVDEIHELSFVDKWFLTQLKELVDVEQYLMTRSLSHLTKDDFIEVKKHGYSDKQIAFAIKSTEKEVRSQRISFGVT PSYKRVDTCAAEFEANTPYMYSSYDAECESAPTKKKKVLILGGGPNRIGQGIEFDYCCCHASFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVE DVLNVIELERPDGIIIQFGGQTPLKLALPIQHYLDKHKPLSASGAGHVRIWGTSPDSIDAAEDRERFNVIIKELNIEQPKGGIAKSEADALAIAADIGYP VVVRPSYVLGGRAMEIVYSDDKLVKYLENAVEVDPQRPVLIDKYLSDAVEIDVDALADSHGDVVIGGVMEHIEQAGVHSGDSACILPTQTISSSCLNTIQ LWTTKLAKSLNVCGLMNCQYAITMGGDVFLLEANPRASRTIPFVSKAIGHPLAKYAALVMSGKSLNEIGFTKEVIPAHVAVKEAVLPFDKFPGCDVLLGP EMRSTGEVMGIDYLVAIAFAKAQIAAGQKLPLSGTVFLSLNDLTKSHLERLAKAFLGLGFRIVSTSGTAHFLELKGISVDRVLKMHEGRPHAGDILANGQ IQLMVITSSGDSLDQIDGRQLRRMALAYKIPIITTVSGALATANAIEKLKTCKIEVMALQDFFNVEPQKDDSKSLQPASSSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29900		VEN3, CARB	VENOSA 3, carbamoyl phosphate ...		Potri.010G023100 [exp]	0	1	Pt-CARB.1
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Potri.010G200200 [exp]	1.00	0.9330
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Potri.003G158100 [exp]	2.00	0.9318
AT3G22330		ATRH53, PMH2	putative mitochondrial RNA hel...		Potri.016G023100 [exp]	3.46	0.9212
AT5G64580		EMB3144	EMBRYO DEFECTIVE 3144, AAA-typ...		Potri.005G059700 [exp]	4.89	0.8771
AT1G79560		EMB36, EMB156, ...	EMBRYO DEFECTIVE 36, EMBRYO DE...		Potri.010G171300 [exp]	4.89	0.8938
AT1G30680			toprim domain-containing prote...		Potri.001G461300 [exp]	7.34	0.8963
AT2G37310			Pentatricopeptide repeat (PPR)...		Potri.006G216100 [exp]	9.79	0.9216
AT4G37170			Pentatricopeptide repeat (PPR)...		Potri.017G091600 [exp]	11.31	0.8848
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Potri.009G103700 [exp]	13.03	0.8821
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Potri.001G072800 [exp]	13.49	0.8999	Pt-TOC75.2

Compare expression of checked genes

Potri.010G023100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.