Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47820 381 / 2e-119 unknown protein AT1G09040 336 / 2e-101 unknown protein AT1G09050 328 / 1e-98 unknown protein AT1G55050 306 / 2e-90 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G210200 [exp] 1369 / 0 AT2G47820 375 / 4e-117 unknown protein Potri.005G027300 [exp] 441 / 6e-141 AT1G09040 386 / 1e-119 unknown protein Potri.013G019300 [exp] 429 / 2e-136 AT1G09040 384 / 1e-118 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037506 [exp] 597 / 0 AT1G09050 359 / 7e-112 unknown protein Lus10006519 [exp] 586 / 0 AT1G09040 350 / 1e-108 unknown protein Lus10029906 [exp] 370 / 8e-112 AT1G09040 385 / 6e-117 unknown protein Lus10004495 [exp] 370 / 9e-112 AT1G09050 376 / 1e-113 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G023900.1 pacid=42800179 polypeptide=Potri.010G023900.1.p locus=Potri.010G023900 ID=Potri.010G023900.1.v4.1 annot-version=v4.1 ATGGAGATGGATGCTATCGAAGGGAATTCCGAGTGGAATTGCACTGAAGATGAATCTGCTGAGCAATCACTTTCTCCAGGTATTTGTGATGCCTACAGAG ATCCTGAGCTGCTTCCTCGCATTGGAGATGAGTACCAAGCTCAAATTCCAGCTCTTATGACAGAATGTTCCAACCGGTTGCTTGTGGAGAATCCAGCTGA TGCAAAAATCTCATCTGCTACTTGCGATGAGTTTTTGGTTGGATTGCCTGTATCATTAATGTGGATCAGTGAGGAAGTTGAGAGCATTAAACATGAACCA CAAGGTTATCCTTGTGATTTGACTGATACATCCAATAGAAACGAGTCTGTAAAACCTGAAAGCATTAGAGAGGCAAAGATTGTTCCAGGAGTTGACTTGA AAGCTAAGGTTGAGCATATGGATATTACAACGAATGGTGGCATGGAAGTAGGAGAATCTGCAAAGTTATGTTTTCAACCAGAATTAAGTAATGAAATGCC TTGTAAGCTTGGAAGCAAAGTTTACTCCTTAGTTCCTGGTTCTGTGAACAACCCTTGGAGTGAAGCAGAGGAGGACAGTTTTCTTCTTGGTTTATATATC TTTGGAAAAAATCTTGTTCAAGTGAAGAACTTTGTTGAGAGCAAGACGATGCTTGACATACTTTCATTTTATTATGGTAAGTTTTATAGGTCTGACAGAC ACCGTAAATGGTCAGAGTGCCGTAAAATAAGAAGCAGAAAATGTGTATATGGGCAAAGGATTTTTACAGGATCGAGGCAACATGAGATGTTATCTCGTTT GCTTCCGCAATTGTCAGAGGAATGCAAAGATATTTTGCTTGAGGCTGCCAAGGCATTTGGAGAGGGAAAAATGTTGCTGGAAGAATATGTATTCACTTTA AAGTTGACAGTTGGATTGCATGCCCTCGTAGAGGCAGTGGGAATTGGTAAAGGAAAACAAGACCTCACAGGCTTTGCCATGGAGTCTCTGAAGTCTAATC AAGTTGCTCATGTCCGTCCAGAAATACCAACCGGAAAAGCATGCTCAACCCTTACACCTGTTGAAATTATCAACTACCTAACTGGTGGCTATCGCTTAAG CAAAGCCCGATCAAATGATCTGTTCTGGGAAGCTGTTTGGCCTCGATTACTTGCAAGAGATTGGCATTCTGAACAGCCTAATGATCATGGTTTTGCTGCT GCCTCCAGGCATTCTCTGGTCTTTCTGATCCCTGGCATCAAGAAGTTTTCAAGAAGGAAACTAGTGAAAGGAGACCACTATTTTGATTCTGTTAGTGATG TCCTGAATAAAGTTGCTTTGGATCCAACACTTCTTGAGCTTGACATTGGAGAAGATAAGGGTGATGGTAGCAAGGAAGAAACCACATGGAACAACAAGAC AAATTTGGACCAAGGAGATTTTCCTGGTCAACAACGCCATTGTTACCTCAAACCTAGAACTCCAAGCCGTACTTCAAATGCCATGATGTTTACCGTGGTT GATACAAGTCTTGCCAATGAGGAAACAAAAAAGGTGAGAGAACTGAGGAGCTTACCAGTTGGATTGATGAGCATATCCAACTCCAGAAGTGATTCTGAAG ATGGTGATGATGATTCTTCGAAGGAGTCAACTGATGAATCTGATTCTTGTGATAAGAATAAGAGTGCCATGATAGAAACCATAAAGAATGATTTGGACAA GGGAGTATTTTCTGACAGTGAAGGCGTTGAAAATAATGCTTTAAAGCAGAGTTTCCCTATAAATGGTTCAGGTTTCACCAAAGCTCTTGAAGAAATTCCT GTGGACCAGAAAGCTGATATGCAGATGAAAAGGGCTATCAAGCGCCAAACAACCCGAAGAGTAAGACATGGAGACAGAAAACTTTTGGCCCCAGTGGCAA AACATCTACATAGATTAATTGCTTGTGACCAGACAAAGACAAGCTGTGGTGTAATTAGTAGTCATGGGTTAAAACAAGATGAGCTTGGTTGTGCTGGAGA AGGTCCTAATTTTAGAGATGAATTTCTCTCTCGAGTGGATCCACCTGTGGAGAAATTATCAGCTACCAGTTCTCCCAGAGGCAGTCCAAATATTAGTGAT GAATGCGCTCTCAGCAGTAATTCCTCTGTTGCTGAACATCCTCATGAGAAACTTCAATCCCGGGCATTGATTGACCTGAACATACCTGTAGCTCAAGATG CTGAAATGGAACCTTCAATGATGGAAGTGATAGAAGTACAAGATGATCAAGCAAGCAGGCAAACAGAGGATTTTTGGCGGCAAAAAATCACTGCACCGGT AGTATGTGATTCTATTCCTCAGCAGCCACCTAATATGAATACCCGAAGACACAGCACAAGAAACCGGCCGCCGACCACTAAAGCACTAGAAGCTCTTGCT TGTGGCTTCTTAAACATAAAGCAGAAGCGGAAGAGTAGAGATGATTTTTCACTAGATAACCGGATGTCGAGGCCTTTACGACGTGCTCGCAGTAAGATGA GAATCACTGAAAGCTTCAGTGTTGATATGACAAATTTTAAAGGAGATGAAAGAAGAAGAAATGGTGGGTGCAAGAGTAACGGAGACATGCTCAGCGAGGT TCAGATTTAA
AA sequence Show only first row Show all	>Potri.010G023900.1 pacid=42800179 polypeptide=Potri.010G023900.1.p locus=Potri.010G023900 ID=Potri.010G023900.1.v4.1 annot-version=v4.1 MEMDAIEGNSEWNCTEDESAEQSLSPGICDAYRDPELLPRIGDEYQAQIPALMTECSNRLLVENPADAKISSATCDEFLVGLPVSLMWISEEVESIKHEP QGYPCDLTDTSNRNESVKPESIREAKIVPGVDLKAKVEHMDITTNGGMEVGESAKLCFQPELSNEMPCKLGSKVYSLVPGSVNNPWSEAEEDSFLLGLYI FGKNLVQVKNFVESKTMLDILSFYYGKFYRSDRHRKWSECRKIRSRKCVYGQRIFTGSRQHEMLSRLLPQLSEECKDILLEAAKAFGEGKMLLEEYVFTL KLTVGLHALVEAVGIGKGKQDLTGFAMESLKSNQVAHVRPEIPTGKACSTLTPVEIINYLTGGYRLSKARSNDLFWEAVWPRLLARDWHSEQPNDHGFAA ASRHSLVFLIPGIKKFSRRKLVKGDHYFDSVSDVLNKVALDPTLLELDIGEDKGDGSKEETTWNNKTNLDQGDFPGQQRHCYLKPRTPSRTSNAMMFTVV DTSLANEETKKVRELRSLPVGLMSISNSRSDSEDGDDDSSKESTDESDSCDKNKSAMIETIKNDLDKGVFSDSEGVENNALKQSFPINGSGFTKALEEIP VDQKADMQMKRAIKRQTTRRVRHGDRKLLAPVAKHLHRLIACDQTKTSCGVISSHGLKQDELGCAGEGPNFRDEFLSRVDPPVEKLSATSSPRGSPNISD ECALSSNSSVAEHPHEKLQSRALIDLNIPVAQDAEMEPSMMEVIEVQDDQASRQTEDFWRQKITAPVVCDSIPQQPPNMNTRRHSTRNRPPTTKALEALA CGFLNIKQKRKSRDDFSLDNRMSRPLRRARSKMRITESFSVDMTNFKGDERRRNGGCKSNGDMLSEVQI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47820			unknown protein		Potri.010G023900 [exp]	0	1
AT2G47620		CHB1, ATSWI3A	SWITCH/sucrose nonfermenting 3...		Potri.015G100400 [exp]	2.64	0.8308
					Potri.013G078001 [exp]	6.00	0.8040
AT5G26760			unknown protein		Potri.015G010900 [exp]	9.48	0.8145
AT3G07560		APM2, PEX13	ABERRANT PEROXISOME MORPHOLOGY...		Potri.014G197200 [exp]	11.35	0.8135
AT5G61500		ATATG3	autophagy 3 (APG3) (.1)		Potri.001G126500 [exp]	18.43	0.8091
AT4G01280	MYB		Homeodomain-like superfamily p...		Potri.002G163100 [exp]	18.73	0.8023
AT5G24240			Phosphatidylinositol 3- and 4-...		Potri.015G013600 [exp]	27.92	0.7870
AT5G41790		CIP1	COP1-interactive protein 1 (.1...		Potri.001G094200 [exp]	28.42	0.8028	Pt-CIP1.1
					Potri.002G208200 [exp]	28.86	0.8030
AT3G04800		ATTIM23-3	translocase inner membrane sub...		Potri.013G039200 [exp]	30.39	0.7978

Compare expression of checked genes

Potri.010G023900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.