Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SRC2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16510 135 / 4e-37 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G09070 124 / 2e-33 (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, soybean gene regulated by cold-2 (.1) AT4G15755 123 / 3e-33 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G62780 100 / 1e-24 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT4G15740 84 / 3e-18 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G33320 62 / 9e-11 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G04540 58 / 2e-09 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G13350 56 / 1e-08 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT4G01200 52 / 7e-08 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G05440 50 / 1e-07 C2 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G209800 [exp] 250 / 2e-82 AT3G16510 137 / 8e-38 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.013G018600 [exp] 140 / 1e-39 AT1G09070 157 / 5e-46 soybean gene regulated by cold-2 (.1) Potri.005G026700 [exp] 139 / 6e-39 AT1G09070 148 / 3e-42 soybean gene regulated by cold-2 (.1) Potri.001G070400 [exp] 92 / 4e-21 AT3G16510 82 / 4e-17 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.013G107175 [exp] 81 / 1e-17 AT3G16510 77 / 1e-15 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.003G160400 [exp] 81 / 4e-17 AT3G16510 72 / 8e-14 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.013G048400 [exp] 77 / 8e-16 AT2G33320 211 / 6e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.019G021300 [exp] 70 / 3e-13 AT3G04360 213 / 2e-65 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G041550 [exp] 64 / 4e-13 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006523 [exp] 161 / 8e-48 AT3G16510 147 / 1e-41 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10004500 [exp] 142 / 5e-41 AT1G09070 179 / 2e-55 soybean gene regulated by cold-2 (.1) Lus10029901 [exp] 139 / 2e-39 AT1G09070 172 / 6e-52 soybean gene regulated by cold-2 (.1) Lus10003570 [exp] 72 / 5e-14 AT2G33320 222 / 7e-67 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10032780 [exp] 71 / 2e-13 AT2G33320 227 / 1e-70 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10036571 [exp] 60 / 2e-10 AT2G45760 105 / 2e-28 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Lus10040923 [exp] 58 / 6e-10 AT2G45760 110 / 4e-30 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Lus10040924 [exp] 53 / 4e-08 AT2G45760 119 / 3e-33 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Lus10009818 [exp] 53 / 5e-08 AT2G45760 120 / 6e-34 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Lus10027502 [exp] 53 / 1e-07 AT5G23950 164 / 8e-50 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Potri.010G024200.1 pacid=42798974 polypeptide=Potri.010G024200.1.p locus=Potri.010G024200 ID=Potri.010G024200.1.v4.1 annot-version=v4.1 ATGGATCAAAGAACCTTAGAGATCAATGTAATCTCTGCAAGAGATCTCAAAGATGTCAATTATATCTCCAAAATGGATGTGTATGCTGTTGTTTCAATCT CTGGTGTTGACTCAAAACAACAACCCAAGCAAAAAACCAAAACCCCAATAGATAGAGATGGTGGAAAAAACCCCACTTGGAACTTCCCTATAAAATTCAC TATCCCTGAAACCTCACTTGCAGAAAACCATCTGAGTCTTGTTTTCAAGCTTAAATGTGAGCGTGCTTTAGGGGATAAAGATATTGGTGAAGTCAACGTG CCAATAAAGGAGCTTTTGGATTCAGCTGGCGATGGTAAATCCATGAAGTTTGTTAGCTATCAGGTAAGGAAACCATCAGGGAAACCTAAAGGTGAGATTA ACTTTTCTTTTAAGTTCGGTGAGATTGAGAAAGTAGTGGTTCCTGAAGCATCATCATCAGCAGCGAAGGCAACTAATTCCAACAGTCAACCTGTCGCTGC ATATCCTGCGGGGCCTACCTCTGTTCCTTATGGTGGACCTGGCTCATATCCACCACCCCCAGCTGGATATGGATATCCACCACCCCCACCTGGATATGGA TATCCACCTCCACCACCATATGGCGGATATCCACCGCCTCCACCACAAGGTTATGGATACCCACCACCGCCACCTGGATATGGATATCCACCTGTTCAAG GGGGGTATGGGTACCCACCACCAGTGCAAGGGCAGCAGCCGCAAAAGAAGAATAAATTTGGGATGGGCCTCGGGGCTGGATTGCTAGGAGGAGCTATTGG TGGGCTTTTGATTGGAGATATGGTGTCTGATGCTGCAGGATTTGATGATGCTGGTGGGTTTGATTTTTGA
AA sequence Show only first row Show all	>Potri.010G024200.1 pacid=42798974 polypeptide=Potri.010G024200.1.p locus=Potri.010G024200 ID=Potri.010G024200.1.v4.1 annot-version=v4.1 MDQRTLEINVISARDLKDVNYISKMDVYAVVSISGVDSKQQPKQKTKTPIDRDGGKNPTWNFPIKFTIPETSLAENHLSLVFKLKCERALGDKDIGEVNV PIKELLDSAGDGKSMKFVSYQVRKPSGKPKGEINFSFKFGEIEKVVVPEASSSAAKATNSNSQPVAAYPAGPTSVPYGGPGSYPPPPAGYGYPPPPPGYG YPPPPPYGGYPPPPPQGYGYPPPPPGYGYPPVQGGYGYPPPVQGQQPQKKNKFGMGLGAGLLGGAIGGLLIGDMVSDAAGFDDAGGFDF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16510			Calcium-dependent lipid-bindin...		Potri.010G024200 [exp]	0	1	SRC2.1
AT4G15093			catalytic LigB subunit of arom...		Potri.018G136800 [exp]	4.35	0.7939
AT3G19480			D-3-phosphoglycerate dehydroge...		Potri.014G022800 [exp]	5.29	0.7837
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Potri.001G416600 [exp]	6.32	0.7641
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.001G314200 [exp]	8.48	0.7029	Pt-B5.3
AT3G51970		ATASAT1, ASAT1,...	ARABIDOPSIS THALIANA STEROL O-...		Potri.001G260700 [exp]	15.16	0.7582
AT1G69360			Plant protein of unknown funct...		Potri.017G088900 [exp]	24.26	0.7013
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.008G094500 [exp]	32.31	0.6908
AT1G23710			Protein of unknown function (D...		Potri.015G076400 [exp]	38.98	0.6738
AT1G34060			Pyridoxal phosphate (PLP)-depe...		Potri.002G064000 [exp]	40.98	0.7381	ATMEPCT.1
AT5G04870		AK1, ATCPK1, CP...	calcium dependent protein kina...		Potri.010G244800 [exp]	41.78	0.6406	CPK1,Pt-CPK2.1

Compare expression of checked genes

Potri.010G024200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.