Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15770 303 / 9e-107 RNA binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G209600 [exp] 361 / 1e-129 AT4G15770 299 / 6e-105 RNA binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000507 [exp] 309 / 5e-109 AT4G15770 328 / 1e-116 RNA binding (.1) Lus10037509 [exp] 306 / 6e-108 AT4G15770 325 / 3e-115 RNA binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [poplar] [flax] PUA PF03657 [poplar] [flax] UPF0113 UPF0113 PUA domain
Representative CDS sequence Show only first row Show all	>Potri.010G024400.1 pacid=42799950 polypeptide=Potri.010G024400.1.p locus=Potri.010G024400 ID=Potri.010G024400.1.v4.1 annot-version=v4.1 ATGAGGCCTTTGGACGAGAAAGAGATGGGTGAAGTTTTCAAGAAACTGATGTTGTTCACAGGAAACAACCTCAAAAACATCATTGAAAGCCCATCACATG AAGGACCAGACCCGAACCCAGGTCGGTACTGCTTCAGGCTCCACAAAAACAAGGTATTTTACATCAGTGAATCAATAGTGAAGCGAGCAACAAACATTGG CCGCAAAAATTTGGTATCTTTAGGTACTTGTATTGGGAAATTCACTCATAGGGGTGATTTTAGATTGACTACACAATCACTGAATTTATTGGCTGCAAAT GCTAAAAATAAAGTTTGGTTGAAGCCCACTTCAGAGATGTCTTTTTTGTATGGGAATCATGTGTTAAAAGGCGGGTTAGGGAAGATTACTGATAGTATCA ATCAAAATGATGGGGTTGTCGTGTTTTCTATGAGTGATGTGCCTTTGGGGTTTGGAACCGCCGCCAGGTCGACACAGGATTGTAGGAAGTGTGATCCTAA TGGGATTGTTGTGCATCACTACTCTGATATTGGTGAGTATTTGAGAGATGAAGATGATCTTTGA
AA sequence Show only first row Show all	>Potri.010G024400.1 pacid=42799950 polypeptide=Potri.010G024400.1.p locus=Potri.010G024400 ID=Potri.010G024400.1.v4.1 annot-version=v4.1 MRPLDEKEMGEVFKKLMLFTGNNLKNIIESPSHEGPDPNPGRYCFRLHKNKVFYISESIVKRATNIGRKNLVSLGTCIGKFTHRGDFRLTTQSLNLLAAN AKNKVWLKPTSEMSFLYGNHVLKGGLGKITDSINQNDGVVVFSMSDVPLGFGTAARSTQDCRKCDPNGIVVHHYSDIGEYLRDEDDL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15770			RNA binding (.1)		Potri.010G024400 [exp]	0	1
AT3G15460			Ribosomal RNA processing Brix ...		Potri.001G403100 [exp]	1.00	0.8633
AT1G04190		TPR3	tetratricopeptide repeat 3, Te...		Potri.010G082900 [exp]	3.00	0.7992
AT4G24830			arginosuccinate synthase famil...		Potri.010G239000 [exp]	4.47	0.7957
AT4G28510		ATPHB1	prohibitin 1 (.1)		Potri.017G017400 [exp]	5.00	0.7943	PHB1.2
AT5G22100			RNA cyclase family protein (.1...		Potri.009G016000 [exp]	7.21	0.8109
AT5G06360			Ribosomal protein S8e family p...		Potri.006G203400 [exp]	7.74	0.7730
AT3G02820			zinc knuckle (CCHC-type) famil...		Potri.010G097400 [exp]	8.06	0.7440
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Potri.008G042400 [exp]	8.36	0.7429	ATS9.3
AT5G06770	C3HZnF		KH domain-containing protein /...		Potri.003G213200 [exp]	10.95	0.7401
AT5G41970			Metal-dependent protein hydrol...		Potri.003G145900 [exp]	12.40	0.7670

Compare expression of checked genes

Potri.010G024400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.