Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15790 152 / 3e-48 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G207500 [exp] 229 / 9e-79 AT4G15790 147 / 2e-46 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008380 [exp] 142 / 9e-44 AT4G15790 122 / 5e-36 unknown protein Lus10004794 [exp] 62 / 3e-13 AT4G15790 62 / 2e-13 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G024600.1 pacid=42799517 polypeptide=Potri.010G024600.1.p locus=Potri.010G024600 ID=Potri.010G024600.1.v4.1 annot-version=v4.1 ATGGCCAACTCCGATTCTTCCACGGCCACTCTCTCTGCTCCTCTTCCTCTAGCTCGTAAGAAAGAGAACGTAACTCCGATCGGTTCAAAGATCGCTGAAT TAAATGAATCCAGGACTGAGCTTCTTAATAGAATCCAAGGCTTAAAGCAGGATTTGCAAAGCTGGAGATCGAAGCTAGACACTCAAGTTAAAATCTATCG CGATGAGTTGTCGGAATTGAAGAAGTCATTGAATGTCGAGGTTGTTCAACTTCGAACAGAATTCCAAGAACTGAAGAACACACTGCAGCAACAACAAGAA GATGTTACTGCTAGCCTTCGAAATTTGGGGCTTCAGGACAGTGCAGGTGATGATGCTCAAGAGGCACAAGAACCCAAGGTTGATGTAGAAGATCAGGAAC TGCATTCTTCAGCTGAAGAGGATATCGAGAAGAAAGATGAAAATTAA
AA sequence Show only first row Show all	>Potri.010G024600.1 pacid=42799517 polypeptide=Potri.010G024600.1.p locus=Potri.010G024600 ID=Potri.010G024600.1.v4.1 annot-version=v4.1 MANSDSSTATLSAPLPLARKKENVTPIGSKIAELNESRTELLNRIQGLKQDLQSWRSKLDTQVKIYRDELSELKKSLNVEVVQLRTEFQELKNTLQQQQE DVTASLRNLGLQDSAGDDAQEAQEPKVDVEDQELHSSAEEDIEKKDEN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15790			unknown protein		Potri.010G024600 [exp]	0	1
AT3G14740			RING/FYVE/PHD zinc finger supe...		Potri.011G103100 [exp]	1.41	0.9271
AT2G36230		HISN3, APG10	ALBINO AND PALE GREEN 10, Aldo...		Potri.004G090500 [exp]	2.44	0.9164
AT5G59970			Histone superfamily protein (....		Potri.007G013500 [exp]	3.00	0.9109	HFO909
AT1G06475			unknown protein		Potri.002G058400 [exp]	4.47	0.8906
AT5G52370			unknown protein		Potri.009G040100 [exp]	5.47	0.8651
AT4G21070		ATBRCA1	ARABIDOPSIS THALIANA BREAST CA...		Potri.001G358100 [exp]	7.48	0.8756	Pt-ATBRCA1.1
AT4G09570		CPK4, ATCPK4	calcium-dependent protein kina...		Potri.019G083200 [exp]	7.74	0.8436
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Potri.002G121500 [exp]	9.48	0.8652	CYCA3.1
AT5G64480			unknown protein		Potri.009G080400 [exp]	9.94	0.7913
AT5G06620		SDG38, ATXR4	SET domain protein 38 (.1)		Potri.006G196566 [exp]	10.58	0.9053

Compare expression of checked genes

Potri.010G024600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.