Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16560 503 / 4e-175 Protein phosphatase 2C family protein (.1) AT2G28890 230 / 1e-67 PLL4 poltergeist like 4 (.1) AT5G02400 229 / 4e-67 PLL2 pol-like 2 (.1) AT1G07630 228 / 1e-66 PLL5 pol-like 5 (.1) AT3G09400 227 / 1e-66 PLL3 pol-like 3 (.1.2) AT2G35350 175 / 5e-47 PLL1 poltergeist like 1 (.1) AT2G46920 167 / 2e-44 POL poltergeist, Protein phosphatase 2C family protein (.1.2) AT3G51370 127 / 6e-33 Protein phosphatase 2C family protein (.1.2) AT3G12620 129 / 8e-33 Protein phosphatase 2C family protein (.1.2) AT5G66080 124 / 6e-31 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G207700 [exp] 807 / 0 AT3G16560 530 / 0.0 Protein phosphatase 2C family protein (.1) Potri.003G159600 [exp] 460 / 7e-158 AT3G16560 476 / 7e-165 Protein phosphatase 2C family protein (.1) Potri.006G085000 [exp] 224 / 3e-65 AT1G07630 661 / 0.0 pol-like 5 (.1) Potri.003G089500 [exp] 198 / 2e-55 AT2G35350 764 / 0.0 poltergeist like 1 (.1) Potri.001G144700 [exp] 190 / 3e-52 AT2G35350 768 / 0.0 poltergeist like 1 (.1) Potri.009G030600 [exp] 181 / 2e-49 AT1G07630 884 / 0.0 pol-like 5 (.1) Potri.001G239300 [exp] 181 / 2e-49 AT2G28890 862 / 0.0 poltergeist like 4 (.1) Potri.014G110500 [exp] 176 / 4e-47 AT2G46920 1092 / 0.0 poltergeist, Protein phosphatase 2C family protein (.1.2) Potri.002G185000 [exp] 176 / 5e-47 AT2G46920 1092 / 0.0 poltergeist, Protein phosphatase 2C family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004793 [exp] 619 / 0 AT3G16560 613 / 0.0 Protein phosphatase 2C family protein (.1) Lus10008378 [exp] 618 / 0 AT3G16560 615 / 0.0 Protein phosphatase 2C family protein (.1) Lus10024397 [exp] 221 / 2e-64 AT1G07630 674 / 0.0 pol-like 5 (.1) Lus10025348 [exp] 219 / 9e-64 AT1G07630 682 / 0.0 pol-like 5 (.1) Lus10040823 [exp] 192 / 5e-53 AT1G07630 869 / 0.0 pol-like 5 (.1) Lus10016555 [exp] 191 / 1e-52 AT1G07630 868 / 0.0 pol-like 5 (.1) Lus10000896 [exp] 177 / 1e-47 AT2G35350 516 / 3e-173 poltergeist like 1 (.1) Lus10004554 [exp] 177 / 2e-47 AT2G35350 512 / 3e-170 poltergeist like 1 (.1) Lus10015047 [exp] 137 / 1e-35 AT3G55050 476 / 7e-169 Protein phosphatase 2C family protein (.1.2) Lus10003993 [exp] 134 / 1e-34 AT3G12620 483 / 1e-171 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.010G024800.1 pacid=42796960 polypeptide=Potri.010G024800.1.p locus=Potri.010G024800 ID=Potri.010G024800.1.v4.1 annot-version=v4.1 ATGCTAGGAGAAAGTACAGATAATCCCGACGGAGAATTCAAGATCAGTTTTGGTTATCAATGCAATGCCCATAAAGGTGGCTCTTGCCTGGTTCCTAATG AGATTGAAAACCTTCCAGGAAAATTCCCTAGGAATAGCAGCTTCTCTCGCTTGTCCGGTGCTGCCTTAAGTGCGAATGCCACTTTGGCCAACACAAATAT CTGCAATGGTGTAATAAGGGAAGAAATACTTCCCAGCTGGGATTCCCCTAATTCATTTCGCAGGATTCTTTCTTCACCTACTCTTTCAAGGTTGGATGTA TTATCGTCTTCTCTTCAAAGCAGTATGTCAAACCTGAGTTGCAGTCCATCCACCCCTAGTCCACCTGAATATGATTCTTCTTCATTAAGATCCATGAGTT CTCCTTCTAGAAATGAAGGTTTTCTTAATGCAATGGAAGTTCAAGTTGCAGGTGGAGCTGCTGGTGAAGACAGGGTTCAAGCTGTCTGCTGTGAAGAAAA TGGTTGGCTTTTTTGCGCAATCTTTGATGGTTTCAATGGAAGAGATGCAGCTGATTTCCTGGCTGGCACGTTATATGAGAACATCATACATCAGACTAAC TTATTAGACTGTGAATTGAAGAAGGATGTTACTGGAGCTTCAAATGGTTTCTATCCGCATGGGCCCTTTCAATATGCTTTTGAGGGAGCTAGGAATAGTC ACCTGGAGAAACCACCAGCGGGAACTTTTAATAAGAAAAATTCAAGCATCGACAACTCCACTAAGAATGGCCCAATTCCTGATTCACCTGATTCATTTAG ACACAGGATGCTAGACAGCCTTCAGCGTGCTGTTAGTCAGGCCGAGAATGATTTCTTGTACATGGTGGAGCAGGAAATGGAGGATCGCCCTGATCTAGTC TCTGTTGGTTCTTGTGTCTTGGTTGGCCTTCTTCATGGGATGGATTTGTATACTCTTAATCTGGGTGATAGCAGAGCTGTATTGGCAACATACGATGAGG AGGACAGTGAGATGAAGGGCTGCGGACGACTAAAAGCTATCCAGCTCACTGACTGTCACACTGTCGACAATGAACTTGAAAGAACTAGAGTGTTGTCTGA TCATCCGGATGACCCGGCAGTGATTGCAGGTGGAAAAGTTAAGGGAAAATTGAAGGTCACTCGAGCTTTGGGAGTTGGATACTTGAAAAAAAAAAACCTA AACGATGCACTGATGGGTATTCTTCGAGTTCGTAATCTCATAAGCCCTCCATACATTTCTATTGAACCATCGCTGAATTTGCATAGAATATCAAAATCGG ATCACTTTGTTATCGTTGGCAGCGATGGTTTGTTTGATTTCTTCAGTAATGACGAGGCAGTAATGCTTGTCCATTCTTACATCCTGAGCAACCCCAATGG TGATCCAGCAAAGTTTCTGTTGGAGCAGCTTGTAGGCAGAGCTGCTGATTGTGCAGGTTTCAGCATGGAAGAATTGATGAATATCCCAGCTGGTAGGAGG AGAAAATATCATGATGATGTGACTTTAATTGTGATTATACTTGGAGCAAACCAGCGCACCTCTAAGGCATCAACTTGGGTGTGA
AA sequence Show only first row Show all	>Potri.010G024800.1 pacid=42796960 polypeptide=Potri.010G024800.1.p locus=Potri.010G024800 ID=Potri.010G024800.1.v4.1 annot-version=v4.1 MLGESTDNPDGEFKISFGYQCNAHKGGSCLVPNEIENLPGKFPRNSSFSRLSGAALSANATLANTNICNGVIREEILPSWDSPNSFRRILSSPTLSRLDV LSSSLQSSMSNLSCSPSTPSPPEYDSSSLRSMSSPSRNEGFLNAMEVQVAGGAAGEDRVQAVCCEENGWLFCAIFDGFNGRDAADFLAGTLYENIIHQTN LLDCELKKDVTGASNGFYPHGPFQYAFEGARNSHLEKPPAGTFNKKNSSIDNSTKNGPIPDSPDSFRHRMLDSLQRAVSQAENDFLYMVEQEMEDRPDLV SVGSCVLVGLLHGMDLYTLNLGDSRAVLATYDEEDSEMKGCGRLKAIQLTDCHTVDNELERTRVLSDHPDDPAVIAGGKVKGKLKVTRALGVGYLKKKNL NDALMGILRVRNLISPPYISIEPSLNLHRISKSDHFVIVGSDGLFDFFSNDEAVMLVHSYILSNPNGDPAKFLLEQLVGRAADCAGFSMEELMNIPAGRR RKYHDDVTLIVIILGANQRTSKASTWV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16560			Protein phosphatase 2C family ...		Potri.010G024800 [exp]	0	1
					Potri.005G078500 [exp]	3.00	0.9216
AT5G55530			Calcium-dependent lipid-bindin...		Potri.001G361100 [exp]	3.74	0.9199
AT5G45160			Root hair defective 3 GTP-bind...		Potri.012G116130 [exp]	7.87	0.8712
					Potri.005G047000 [exp]	10.09	0.9071
AT1G13420		SST1, ATST4B	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.017G100500 [exp]	12.68	0.8994
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.012G090400 [exp]	16.00	0.9030
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Potri.007G132000 [exp]	19.20	0.8959
					Potri.013G110651 [exp]	19.79	0.8569
AT2G27140			HSP20-like chaperones superfam...		Potri.004G191101 [exp]	20.24	0.9029
AT5G62360			Plant invertase/pectin methyle...		Potri.015G128300 [exp]	20.39	0.8977

Compare expression of checked genes

Potri.010G024800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.