Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16565 338 / 3e-118 alanine-tRNA ligases;nucleic acid binding;ligases, forming aminoacyl-tRNA and related compounds;nucleotide binding;ATP binding (.1.2) AT5G22800 64 / 1e-11 EMB86, EMB263, EMB1030 EMBRYO DEFECTIVE 86, EMBRYO DEFECTIVE 263, EMBRYO DEFECTIVE 1030, Alanyl-tRNA synthetase, class IIc (.1) AT1G50200 54 / 3e-08 ACD, ALATS Alanyl-tRNA synthetase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G141300 [exp] 58 / 2e-09 AT5G22800 1437 / 0.0 EMBRYO DEFECTIVE 86, EMBRYO DEFECTIVE 263, EMBRYO DEFECTIVE 1030, Alanyl-tRNA synthetase, class IIc (.1) Potri.005G094300 [exp] 51 / 3e-07 AT1G50200 1535 / 0.0 Alanyl-tRNA synthetase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000503 [exp] 271 / 1e-92 AT3G16565 269 / 2e-91 alanine-tRNA ligases;nucleic acid binding;ligases, forming aminoacyl-tRNA and related compounds;nucleotide binding;ATP binding (.1.2) Lus10017408 [exp] 56 / 8e-09 AT3G13530 1761 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) Lus10003337 [exp] 56 / 1e-08 AT5G22800 855 / 0.0 EMBRYO DEFECTIVE 86, EMBRYO DEFECTIVE 263, EMBRYO DEFECTIVE 1030, Alanyl-tRNA synthetase, class IIc (.1) Lus10022640 [exp] 56 / 1e-08 AT5G22800 1455 / 0.0 EMBRYO DEFECTIVE 86, EMBRYO DEFECTIVE 263, EMBRYO DEFECTIVE 1030, Alanyl-tRNA synthetase, class IIc (.1) Lus10010210 [exp] 50 / 6e-07 AT1G50200 1511 / 0.0 Alanyl-tRNA synthetase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [poplar] [flax] tRNA_synt_II PF01411 [poplar] [flax] tRNA-synt_2c tRNA synthetases class II (A)
Representative CDS sequence Show only first row Show all	>Potri.010G024900.5 pacid=42798533 polypeptide=Potri.010G024900.5.p locus=Potri.010G024900 ID=Potri.010G024900.5.v4.1 annot-version=v4.1 ATGGATTTGAGCTCAACAAAACTTGATTACTACCATGACATGTGGAAACTCCAATCCAAAGCCACACTTTTATCTTTCTTCAAGGGAGAAGATGGCAGAA ATGCTTTGATTTTAGACTCAACAATCTTTCATCCTCAAGGTGGAGGCCAACTAGCTGACACTGGAGTCATCACCATTGCTGCTGATTCCAGTTTCAAGTT TATCGTCCAAGATGTTCGATCCAAGGATGGAATTGTCTACCATTATGGGGTTATTGAGGAGGGTTCTGGTAAGGATTTTGAAATGGAAGTTGTAAGAGGG GGAGAAGTTTTTTTGTTTGTTGATGAGGCGAGGCGAAAGCTGAATTCAAGGCTGCACTCAGCTGGGCATTTGATGGATGCGTGCCTGGAAGAAGTGGGAT TGGGGCATTTGGAGCCAGGAAAGGGATACCATTTTCCTGATGGGCCATTTGTTGAATACAAAGGAACAATTCCTCAAAATGAATTGCAGAGCAAGCAACA TGAATTAGAACTAGCAGCAAATGCTTTAATATCCAGGGGAGGCAAGGTTTCTGCTGCTGTATTGCCATACGAAGAAGCTGCTGAATTATGTGGTGGTTTC CTTCCTGATTACATACCAAAGGACAGCACTCCTCGTGTTGTGAAGTTAGGGAACAGCGCCGTGTGTTGTGGTGGCACGCATGTTTCTGATATTTCAGAGA TTATAAGTTTGCAGGTTTCTCAGATTCGTAAGAAGAAGTGA
AA sequence Show only first row Show all	>Potri.010G024900.5 pacid=42798533 polypeptide=Potri.010G024900.5.p locus=Potri.010G024900 ID=Potri.010G024900.5.v4.1 annot-version=v4.1 MDLSSTKLDYYHDMWKLQSKATLLSFFKGEDGRNALILDSTIFHPQGGGQLADTGVITIAADSSFKFIVQDVRSKDGIVYHYGVIEEGSGKDFEMEVVRG GEVFLFVDEARRKLNSRLHSAGHLMDACLEEVGLGHLEPGKGYHFPDGPFVEYKGTIPQNELQSKQHELELAANALISRGGKVSAAVLPYEEAAELCGGF LPDYIPKDSTPRVVKLGNSAVCCGGTHVSDISEIISLQVSQIRKKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16565			alanine-tRNA ligases;nucleic a...		Potri.010G024900 [exp]	0	1
AT5G47730			Sec14p-like phosphatidylinosit...		Potri.016G005100 [exp]	38.67	0.8198	Pt-SSH1.1
AT2G03550			alpha/beta-Hydrolases superfam...		Potri.009G104000 [exp]	102.68	0.8191
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Potri.005G103200 [exp]	150.13	0.7936
AT1G28380		NSL1	necrotic spotted lesions 1, MA...		Potri.011G057100 [exp]	218.90	0.8018
AT1G01490			Heavy metal transport/detoxifi...		Potri.017G147400 [exp]	247.24	0.7939

Compare expression of checked genes

Potri.010G024900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.