Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62720 672 / 0 ATXT1, XXT1 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) AT4G02500 653 / 0 ATXT2, XXT2 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) AT1G74380 503 / 2e-177 XXT5 xyloglucan xylosyltransferase 5 (.1) AT5G07720 501 / 1e-176 Galactosyl transferase GMA12/MNN10 family protein (.1) AT1G18690 478 / 1e-166 Galactosyl transferase GMA12/MNN10 family protein (.1) AT2G22900 291 / 4e-94 Galactosyl transferase GMA12/MNN10 family protein (.1) AT4G37690 280 / 2e-90 Galactosyl transferase GMA12/MNN10 family protein (.1) AT4G38310 102 / 4e-26 Galactosyl transferase GMA12/MNN10 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G025300 [exp] 708 / 0 AT4G02500 775 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Potri.008G208000 [exp] 704 / 0 AT4G02500 773 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Potri.015G061800 [exp] 508 / 3e-179 AT5G07720 730 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.012G068300 [exp] 507 / 6e-179 AT5G07720 755 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.007G005900 [exp] 293 / 3e-95 AT2G22900 593 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.014G006100 [exp] 288 / 8e-93 AT2G22900 592 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.010G025400 [exp] 41 / 0.0001 AT4G02500 68 / 8e-15 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037519 [exp] 674 / 0 AT4G02500 786 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10037516 [exp] 673 / 0 AT4G02500 786 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10002870 [exp] 668 / 0 AT4G02500 779 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10037514 [exp] 568 / 0 AT3G62720 615 / 0.0 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) Lus10019076 [exp] 504 / 3e-178 AT5G07720 744 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10021631 [exp] 504 / 1e-177 AT5G07720 766 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10015721 [exp] 501 / 6e-177 AT5G07720 741 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10000563 [exp] 497 / 2e-174 AT5G07720 759 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10037520 [exp] 354 / 4e-122 AT4G02500 449 / 3e-159 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10011550 [exp] 307 / 2e-100 AT2G22900 571 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF05637 [poplar] [flax] Glyco_transf_34 galactosyl transferase GMA12/MNN10 family
Representative CDS sequence Show only first row Show all	>Potri.010G025100.1 pacid=42799582 polypeptide=Potri.010G025100.1.p locus=Potri.010G025100 ID=Potri.010G025100.1.v4.1 annot-version=v4.1 ATGCTGGACTGGTGCCTAGGAAGTTATCGGGACCACCTGTTCCAGAGACCAATGTGCCATGCCAAGGTCACCCTACTCTGCCTCTTCATGACCGCCATCG TCCTACTTGGCACAATTGGCGCCGGCAAGTTTGGCACTCAGGAGCAACACTTTAACTACCTCCGCAACAACTTCTACTCTTCTCGCAAGCGCGCCGAGCC ACAGAAAGTTGTCATTGAATTGACTCGCAACAACAGCAGGAATGATACGAATATCAAAAGCGATGATCCAAATAGCTATGCCTCATTTGATATTAACAAG CTATTCGTCGATGAAGGCGAAGACGATGAGAATCCTGATTCGGACAAGCCATACAGTTTGGGGCCGAAGATTTTAGATTGGGACCAGAAGAGAGCTGAAT GGCTAGGTGAAAACCCGAAGTTTCCCAACTTTGTTGGGCCTGACAAACCGAGAGTTCTGTTAGTCACAGGATCTTCACCGAAACCTTGCGAGAATCGTGT CGGCGATCATTACCTGCTAAAATCAATTAAAAATAAGATTGATTACTGCAGGCTTCACGGCATCGACATTTTTTACAACATGGCTCTGCTTGACGCTGAA ATGGCTGGCTTTTGGGCTAAGCTGCCGTTAATAAGGAAGCTGCTGGTTTCGCAGCCCGAGATAGAATTCTTGTGGTGGATGGATAGCGATGCTATGTTTA CAGACATGGCATTTGAGGTGCCGTGGGAGAAGTACAAGGATTATAACCTTGTGATGCACGGGTGGAAGGAGATGGTTTATGATCAAAGGAATTGGATTGG ACTGAACACAGGGAGTTTCTTCATAAGGAACTGTCAATGGTCATTGGATCTTTTAGATGCATGGGCACCAATGGGGCCTAAAGGGAAGATTAGAGATGAA GCAGGGAAACTACTTGCCAAGGAGCTGAAAGGGAGGCCGGTTTTCGAAGCTGATGATCAGTCTGCAATGGTATATTTGCTGGCTACACAGAGGGATAAGT GGGGCGACAAAGTATATTTAGAGAATGCTTATTATTTGCATGGTTACTGGGAGATCTTGGTTGACAGGTACGAGGAGATGATCGAGAAATACCATGCCGG TCTTGGTGATGATCGGTGGCCTCTTGTTACTCACTTCGTAGGATGCAAACCTTGTGGGAAGGCGGGGGATTATCCGGTGGAGAGGTGCTTGAAGCAGATG GACCGTGCTTTCAATTTTGGAGATGACCAGATTCTGCAGAAATATGGGTATGCTCATACTTCACTGGCTGCTTGGAGGGTTAGGAAGAGCAGTAATTAA
AA sequence Show only first row Show all	>Potri.010G025100.1 pacid=42799582 polypeptide=Potri.010G025100.1.p locus=Potri.010G025100 ID=Potri.010G025100.1.v4.1 annot-version=v4.1 MLDWCLGSYRDHLFQRPMCHAKVTLLCLFMTAIVLLGTIGAGKFGTQEQHFNYLRNNFYSSRKRAEPQKVVIELTRNNSRNDTNIKSDDPNSYASFDINK LFVDEGEDDENPDSDKPYSLGPKILDWDQKRAEWLGENPKFPNFVGPDKPRVLLVTGSSPKPCENRVGDHYLLKSIKNKIDYCRLHGIDIFYNMALLDAE MAGFWAKLPLIRKLLVSQPEIEFLWWMDSDAMFTDMAFEVPWEKYKDYNLVMHGWKEMVYDQRNWIGLNTGSFFIRNCQWSLDLLDAWAPMGPKGKIRDE AGKLLAKELKGRPVFEADDQSAMVYLLATQRDKWGDKVYLENAYYLHGYWEILVDRYEEMIEKYHAGLGDDRWPLVTHFVGCKPCGKAGDYPVERCLKQM DRAFNFGDDQILQKYGYAHTSLAAWRVRKSSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62720		ATXT1, XXT1	XYG XYLOSYLTRANSFERASE 1, xylo...		Potri.010G025100 [exp]	0	1
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Potri.007G061540 [exp]	4.47	0.8126
					Potri.008G084001 [exp]	4.89	0.8120
					Potri.006G226200 [exp]	12.36	0.7451
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.015G003100 [exp]	15.74	0.7964	COMT1,Pt-OMT1.2
AT3G42170			BED zinc finger ;hAT family di...		Potri.018G126500 [exp]	18.16	0.7881
AT2G17070			Arabidopsis protein of unknown...		Potri.009G142500 [exp]	18.46	0.7603
AT2G33320			Calcium-dependent lipid-bindin...		Potri.013G048400 [exp]	19.79	0.7419
AT5G35770		SAP	STERILE APETALA, Transducin/WD...		Potri.014G166400 [exp]	23.66	0.7782	SAP.1
AT4G17260			Lactate/malate dehydrogenase f...		Potri.008G135920 [exp]	24.95	0.7972
AT2G20760			Clathrin light chain protein (...		Potri.019G102000 [exp]	26.98	0.7799

Compare expression of checked genes

Potri.010G025100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.