Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 472 / 8e-159 S-locus lectin protein kinase family protein (.1) AT4G21380 371 / 3e-119 ARK3 receptor kinase 3 (.1) AT1G65800 340 / 2e-107 ARK2 receptor kinase 2 (.1) AT1G65790 322 / 2e-100 ARK1 receptor kinase 1 (.1) AT1G11340 320 / 4e-99 S-locus lectin protein kinase family protein (.1) AT1G11410 313 / 6e-97 S-locus lectin protein kinase family protein (.1) AT4G27300 303 / 1e-93 S-locus lectin protein kinase family protein (.1) AT3G12000 291 / 5e-93 S-locus related protein SLR1, putative (S1) (.1) AT1G11280 290 / 6e-89 S-locus lectin protein kinase family protein (.1.2.3.4) AT1G61480 290 / 1e-88 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G025800 [exp] 1012 / 0 AT4G27290 828 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G017600 [exp] 832 / 0 AT4G27290 837 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018400 [exp] 829 / 0 AT4G27290 847 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018300 [exp] 828 / 0 AT4G27290 841 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G017900 [exp] 824 / 0 AT4G27290 835 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G020300 [exp] 823 / 0 AT4G27290 832 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G015800 [exp] 818 / 0 AT4G27290 844 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G154400 [exp] 817 / 0 AT4G27290 682 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018600 [exp] 812 / 0 AT4G27290 853 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014808 [exp] 498 / 5e-170 AT4G27290 588 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038553 [exp] 461 / 2e-153 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033365 [exp] 451 / 9e-150 AT4G21380 810 / 0.0 receptor kinase 3 (.1) Lus10038552 [exp] 448 / 5e-149 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 446 / 4e-148 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038556 [exp] 445 / 9e-148 AT4G21380 769 / 0.0 receptor kinase 3 (.1) Lus10037865 [exp] 433 / 4e-143 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 431 / 2e-142 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038554 [exp] 413 / 1e-135 AT4G27290 776 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 402 / 3e-131 AT4G21380 768 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Potri.010G025500.5 pacid=42799541 polypeptide=Potri.010G025500.5.p locus=Potri.010G025500 ID=Potri.010G025500.5.v4.1 annot-version=v4.1 ATGAGATTTCTGAGGGATTGCATTTCCATACTTCTTTTTTGCTCTACTTTGCTTCTGATTGTAGAAGTAGCCACCCCTGTTGACACCATTAACACAACCC TGTCAATTCGAGATGGAGACACCATAGTCTCGGCTGGTGGCACCTATGAATTAGGATTTTTCAGCCCCGGAAAATCCAAAAACCGATACTTGGGGATATG GTATGGCAAAATATCAGTCCAGACAGCAGTGTGGGTTGCCAACAGAGAATCTCCACTTAACGATTCATCAGGTGTTGTAAGGCTTACCAACCAAGGACTT CTTGTCCTTGTCAATCGCAGTGGAAGCATCATTTGGTCTTCCAACACATCAACACCTGCTAGGAATCCAGTTGCACAGCTTTTGGATTCGGGAAACCTTG TTGTGAAAGAGGAGGGTGATAATAACCCGGAGAACTCCCTGTGGCAGAGTTTTGAACATCCAGGTAATACATTAATACCGGGCATGAAGATAGGACGGAA TAGAGTCACTGGCATGGACTGGAGCTTGGCAGCATGGAAGTCACTAGATGATCCTTCTAGAGGTAACATAACAGGTATCCTTGTTCCTTATGGATATCCC GAGTTAGTAGAGCTGGAAGATTCGAAAGTGAAGTATCGATCTGGGCCATGGAATGGTCTGGGGTTCAGTGGTATGCCTCCATTAAAACCAAATCCAATAT ATACATATGAATTTGTTTTTAACGAGAAGGAGATATTTTACAGAGAACAGCTTGTTAATAGCTCAATGCATTGTAGGATTGTCTTGGCTCAGAATGGTGA TATCCAACAACTTTTGTGGATTGAGAAAACCCAGAGCTGGTTTCTTTACGAAACAGAAAACATCAATAATTGTGCGCGTTATAAACTATGTGGTGCAAAT GGCATCTGTAGTATTAACAACTCTCCGGTGTGTGATTGCTTAAATGGATTTGTACCGAGAGTTCCAAGAGACTGGGAGAGGACAGATTGGTCAAGTGGTT GCATCAGAAAGACTGCACTAAACTGTTCAGGAGATGGGTTTCAAAAAGTCTCAGGTGTGAAGTTGCCGGAGACAAGGCAATCATGGTTTAACAAGAGCAT GAGCCTGGAGGAGTGCAGGAACACGTGCTTGAAGAACTGCAGCTGTACTGCGTATGCAAACATGGACATCAGGAATGGAGGAAGTGGGTGCTTGCTTTGG TTCAATGATCTGATCGATATTTTGTTTCAAGATGAGAAAGACACCATTTTTATACGGAGGGCTGCATCAGAACTAGGTAATGGTGATAGTGCAAAGGTTA ATACGAAATCCAATGCAAAGAAAAGGATCGTGGTAAGCACTGTGTTGTCCACAGGACTTGTGTTCCTTGGACTAGCCTTGGTCTTGCTCTTGCATGTTTG GAGAAAGCAGCAGCAGAAAAAACGTAATTTGCCAAGCGGATCGAATAACAAGGATATGAAGGAAGAACTAGAATTACCCTTCTTTAATATGGATGAGTTG GCTTCTGCAACAAATAACTTTTCTGATGCCAATAAACTAGGAGAAGGAGGTTTCGGACCTGTTTATAAGATAATAATTATCTGTAAACGGTCATGCAATA TGGCCTATGGCCTCTGA
AA sequence Show only first row Show all	>Potri.010G025500.5 pacid=42799541 polypeptide=Potri.010G025500.5.p locus=Potri.010G025500 ID=Potri.010G025500.5.v4.1 annot-version=v4.1 MRFLRDCISILLFCSTLLLIVEVATPVDTINTTLSIRDGDTIVSAGGTYELGFFSPGKSKNRYLGIWYGKISVQTAVWVANRESPLNDSSGVVRLTNQGL LVLVNRSGSIIWSSNTSTPARNPVAQLLDSGNLVVKEEGDNNPENSLWQSFEHPGNTLIPGMKIGRNRVTGMDWSLAAWKSLDDPSRGNITGILVPYGYP ELVELEDSKVKYRSGPWNGLGFSGMPPLKPNPIYTYEFVFNEKEIFYREQLVNSSMHCRIVLAQNGDIQQLLWIEKTQSWFLYETENINNCARYKLCGAN GICSINNSPVCDCLNGFVPRVPRDWERTDWSSGCIRKTALNCSGDGFQKVSGVKLPETRQSWFNKSMSLEECRNTCLKNCSCTAYANMDIRNGGSGCLLW FNDLIDILFQDEKDTIFIRRAASELGNGDSAKVNTKSNAKKRIVVSTVLSTGLVFLGLALVLLLHVWRKQQQKKRNLPSGSNNKDMKEELELPFFNMDEL ASATNNFSDANKLGEGGFGPVYKIIIICKRSCNMAYGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27290			S-locus lectin protein kinase ...		Potri.010G025500 [exp]	0	1
AT4G27290			S-locus lectin protein kinase ...		Potri.010G025800 [exp]	1.00	0.9815
AT4G27290			S-locus lectin protein kinase ...		Potri.010G025700 [exp]	2.00	0.9749
AT5G09220		AAP2	amino acid permease 2 (.1)		Potri.009G133600 [exp]	2.82	0.8777
AT4G27290			S-locus lectin protein kinase ...		Potri.010G025601 [exp]	3.00	0.9236
AT4G08850			Leucine-rich repeat receptor-l...		Potri.019G129400 [exp]	3.16	0.8671
AT2G02820	MYB	ATMYB88	myb domain protein 88 (.1.2)		Potri.008G148400 [exp]	4.24	0.7978	MYB124.1
AT2G30090			Acyl-CoA N-acyltransferases (N...		Potri.001G279400 [exp]	6.32	0.8186
AT1G35710			Protein kinase family protein ...		Potri.019G129100 [exp]	6.48	0.8593
AT4G04220		AtRLP46	receptor like protein 46 (.1)		Potri.001G003200 [exp]	7.41	0.8110
AT3G47570			Leucine-rich repeat protein ki...		Potri.005G031300 [exp]	8.94	0.8377

Compare expression of checked genes

Potri.010G025500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.