Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 233 / 8e-72 S-locus lectin protein kinase family protein (.1) AT3G12000 173 / 1e-51 S-locus related protein SLR1, putative (S1) (.1) AT4G21380 177 / 8e-51 ARK3 receptor kinase 3 (.1) AT1G11300 171 / 2e-48 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G11350 169 / 3e-48 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT4G21390 168 / 7e-48 B120 S-locus lectin protein kinase family protein (.1) AT1G11340 163 / 4e-46 S-locus lectin protein kinase family protein (.1) AT1G61610 163 / 5e-46 S-locus lectin protein kinase family protein (.1) AT1G65800 162 / 2e-45 ARK2 receptor kinase 2 (.1) AT1G11330 160 / 4e-45 S-locus lectin protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G025500 [exp] 478 / 2e-169 AT4G27290 472 / 7e-159 S-locus lectin protein kinase family protein (.1) Potri.010G025800 [exp] 469 / 4e-162 AT4G27290 828 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G017800 [exp] 390 / 2e-136 AT4G27290 462 / 1e-156 S-locus lectin protein kinase family protein (.1) Potri.011G154400 [exp] 392 / 3e-134 AT4G27290 682 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G412454 [exp] 381 / 3e-134 AT4G27290 316 / 9e-102 S-locus lectin protein kinase family protein (.1) Potri.010G020200 [exp] 386 / 2e-133 AT4G27290 517 / 3e-176 S-locus lectin protein kinase family protein (.1) Potri.010G018200 [exp] 385 / 6e-133 AT4G27290 444 / 4e-148 S-locus lectin protein kinase family protein (.1) Potri.010G015800 [exp] 392 / 4e-132 AT4G27290 844 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018400 [exp] 391 / 7e-132 AT4G27290 847 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014808 [exp] 217 / 3e-66 AT4G27290 588 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 217 / 2e-65 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038556 [exp] 215 / 8e-65 AT4G21380 769 / 0.0 receptor kinase 3 (.1) Lus10014810 [exp] 213 / 2e-64 AT4G27290 692 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 213 / 5e-64 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 210 / 6e-63 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 201 / 9e-60 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014812 [exp] 201 / 2e-59 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038553 [exp] 196 / 1e-57 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033365 [exp] 196 / 2e-57 AT4G21380 810 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01453 [poplar] [flax] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Potri.010G025601.1 pacid=42799478 polypeptide=Potri.010G025601.1.p locus=Potri.010G025601 ID=Potri.010G025601.1.v4.1 annot-version=v4.1 ATGAGATTTCTGAGGGATTGCATTTCCGTACTTCTTTTTTGCTCCACTTTGCTTCTGATTGTAGAAGTAGCCACCCCTATTGACACCATTAACACAACCC TGTCAATTCGAGATGGAGACACCATAGTCTCGGCTGGTGGCACCTATGAATTAGGATTTTTCAGCCCCGGAAAATCCAAAAACCGATACTTGGGGATATG GTATGGCAAAATATCAGTCCAGACAGCAGTGTGGGTTGCCAACAGAGAATCTCCACTTAACGATTCATCAGGTGTTGTAAGGCTTACCAACCAAGGACTT CTTGTCCTTGTCAATCGCAGTGGAAGTATCATTTGGTCATCCAACACATCAACACCTGCTAGGAATCCAGTTGCACAGCTTTTGGATTCGGGAAACCTTG TTGTGAAAGAGGAGGGTGATAATAACCCGGAAAACTCCCTGTGGCAGAGTTTTGAACATCCAGGTAATACATTAATACCGGGCATGAAGATAGGACGGAA TAGAGTAACTGGCATGGACTGGAGCTTGGCAGCATGGAAGTCAGTAGATGATCCTTCTAGAGGTAACATTACAGGTATCCTTGTTCCTTATGGATATCCC GAGTTAGTAGAGCTGGAAGATTCGAAAGTGAAGTATCGATCTGGGCCATGGAATGGTCTGGGGTTCAGTGGTATGCCTCCATTAAAACCAAATCCAATAT ACACATATTAA
AA sequence Show only first row Show all	>Potri.010G025601.1 pacid=42799478 polypeptide=Potri.010G025601.1.p locus=Potri.010G025601 ID=Potri.010G025601.1.v4.1 annot-version=v4.1 MRFLRDCISVLLFCSTLLLIVEVATPIDTINTTLSIRDGDTIVSAGGTYELGFFSPGKSKNRYLGIWYGKISVQTAVWVANRESPLNDSSGVVRLTNQGL LVLVNRSGSIIWSSNTSTPARNPVAQLLDSGNLVVKEEGDNNPENSLWQSFEHPGNTLIPGMKIGRNRVTGMDWSLAAWKSVDDPSRGNITGILVPYGYP ELVELEDSKVKYRSGPWNGLGFSGMPPLKPNPIYTY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27290			S-locus lectin protein kinase ...		Potri.010G025601 [exp]	0	1
AT4G27290			S-locus lectin protein kinase ...		Potri.010G025800 [exp]	1.73	0.9367
AT5G09220		AAP2	amino acid permease 2 (.1)		Potri.009G133600 [exp]	2.00	0.9136
AT4G27290			S-locus lectin protein kinase ...		Potri.010G025700 [exp]	2.44	0.9261
AT4G27290			S-locus lectin protein kinase ...		Potri.010G025500 [exp]	3.00	0.9236
AT2G28200	C2H2ZnF		C2H2-type zinc finger family p...		Potri.011G168900 [exp]	9.16	0.8403
AT4G04220		AtRLP46	receptor like protein 46 (.1)		Potri.001G003200 [exp]	9.38	0.8019
AT2G23210			UDP-Glycosyltransferase superf...		Potri.009G095550 [exp]	9.89	0.8388
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Potri.006G239200 [exp]	11.18	0.7727
					Potri.005G163950 [exp]	12.32	0.7793
AT1G30220		ATINT2	ARABIDOPSIS THALIANA INOSITOL ...		Potri.004G133340 [exp]	13.85	0.8006

Compare expression of checked genes

Potri.010G025601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.