Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 575 / 0 S-locus lectin protein kinase family protein (.1) AT4G27300 546 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 533 / 0 ARK3 receptor kinase 3 (.1) AT1G65800 521 / 7e-177 ARK2 receptor kinase 2 (.1) AT1G65790 518 / 1e-175 ARK1 receptor kinase 1 (.1) AT4G21390 475 / 5e-159 B120 S-locus lectin protein kinase family protein (.1) AT1G11340 476 / 8e-159 S-locus lectin protein kinase family protein (.1) AT1G11410 474 / 1e-158 S-locus lectin protein kinase family protein (.1) AT1G61500 459 / 3e-153 S-locus lectin protein kinase family protein (.1) AT1G11330 459 / 9e-153 S-locus lectin protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G025800 [exp] 1119 / 0 AT4G27290 828 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018400 [exp] 979 / 0 AT4G27290 847 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G017900 [exp] 973 / 0 AT4G27290 835 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018300 [exp] 972 / 0 AT4G27290 841 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G015800 [exp] 969 / 0 AT4G27290 844 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G015400 [exp] 966 / 0 AT4G27290 683 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018600 [exp] 966 / 0 AT4G27290 853 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G020300 [exp] 966 / 0 AT4G27290 832 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G017600 [exp] 965 / 0 AT4G27290 837 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038553 [exp] 657 / 0 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033365 [exp] 644 / 0 AT4G21380 810 / 0.0 receptor kinase 3 (.1) Lus10038552 [exp] 630 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 599 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 598 / 0 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10037865 [exp] 591 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038556 [exp] 590 / 0 AT4G21380 769 / 0.0 receptor kinase 3 (.1) Lus10038554 [exp] 590 / 0 AT4G27290 776 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014811 [exp] 587 / 0 AT4G27290 808 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 587 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain CL0168 [poplar] [flax] PF11883 [poplar] [flax] DUF3403 Domain of unknown function (DUF3403)
Representative CDS sequence Show only first row Show all	>Potri.010G025700.3 pacid=42796814 polypeptide=Potri.010G025700.3.p locus=Potri.010G025700 ID=Potri.010G025700.3.v4.1 annot-version=v4.1 ATGCATTGGAGGATCGTCGTGGCTCAGAATGGTGATATCCAACAACTTTTGTGGATTGAGAAAACCCAGAGCTGGTTTCTTTACGAAACTGAAAACATCA ATAATTGTGCGCGTTATAAACTATGTGGTGCAAATGGCATCTGTAGTATTGACAACTCTCCGGTGTGTGATTGCTTAAATGGATTTGTACCGAGAGTTCC AAGAGACTGGGAGAGGACAGATTGGTCAAGTGGTTGCATCAGAAAGACTGCACTAAACTGTTCAGGAGATGGGTTTCGAAAAGTCTCAGGTGTGAAGTTG CCGGAGACAAGGCAATCATGGTTTAACAAGAGTATGAGCCTGGAGGAGTGCAGGAACACGTGCTTGAAGAACTGCAGCTGTACTGCGTATGCAAACATGG ACATCAGGAATGGAGGAAGTGGGTGCTTGCTTTGGTTCAATGATCTGATCGATATTTTGTTTCAAGATGAGAAAGACACCATTTTTATACGGATGGCTGC ATCAGAACTACCGGGTAATGGTGATAGTGAAAAGGTTAATACGAAATCCAACGCAAAGAAAAGGATCGTGGTAAGCACTGTGTTGTCCACAGGACTTGTG TTCCTTGGACTAGCCTTGGTCTTGCTCTTGCATGTTTGGAGAAAGCAGCAGCAGAAAAAACGTAATTTGCCAAGCGGATCGAATAACAAGGATATGAAGG AAGAACTAGAATTACCCTTCTTTAATATGGATGAGTTGGCTTCTGCAACAAATAACTTTTCTGATGCCAATAAAGTAGGAGCAGGAGGTTTCGGACCTGT TTATAAGGGAACCCTTGCAGATGGACGAGAAATAGCTGTGAAGAGGCTCTCTAAGAATTCAAGACAAGGACTTGATGAATTCAAAAATGAAGTTAAACAT ATCGTGAAACTTCAGCATCGGAATCTAGTGAGGCTCCTTGGATGCTGCATTGAAAGAGATGAAAAGATGTTGGTCTACGAGTTTTTGCCTAACAAAAGCT TGGACTTCTATATTTTTGATGAAACTCATAGCTTACTACTAGATTGGCGTCAGCGCTACAATATCATCAATGGGATTGCTCGTGGACTTCTTTATCTTCA CCAAGATTCGAGACTAAGAATAATCCACAGAGATCTGAAAACCAGCAATATTTTGTTGGATTACGAAATGAATCCAAAAATCTCAGACTTTGGCCTGGCT AGAAGTTTTGGAGAAAATGAAACTGAAGCCAGTACTAATAAAGTGGCTGGAACGTATGGTTACATATCTCCAGAGTATGCAAATTATGGACTCTACTCGC TAAAATCAGACGTCTTCAGCTTTGGTGTATTGGTGCTAGAGATAGTGAGTGGCTATAGGAACAGAGGATTCAGTCACCCAGATCACCACCTCAACCTTAT CGGGCATGCTTGGATACTGTTCAAACAAGGCAGGTCTCTAGAACTGGTTGGGGAATCAAAAGTTGAAACACCTTATTTATCTGAAGTACTACGTTCGATT CATGTGGGGCTATTGTGTGTGCAAGAAAATACAGAAGATAGGCCAAACATGTCATATGTGGTTTTGATGTTGGGTAATGAAGATGAACTGCCTCAGCCTA AACAACCAGGATTCTTCACTGAAAGGGATCTTATTGAAGCATGTTATTCATCAAGCCAGTGCAAACCACCTTCAGCGAACGAGTGCTCGATTTCATTGCT GGAGGCAAGATAG
AA sequence Show only first row Show all	>Potri.010G025700.3 pacid=42796814 polypeptide=Potri.010G025700.3.p locus=Potri.010G025700 ID=Potri.010G025700.3.v4.1 annot-version=v4.1 MHWRIVVAQNGDIQQLLWIEKTQSWFLYETENINNCARYKLCGANGICSIDNSPVCDCLNGFVPRVPRDWERTDWSSGCIRKTALNCSGDGFRKVSGVKL PETRQSWFNKSMSLEECRNTCLKNCSCTAYANMDIRNGGSGCLLWFNDLIDILFQDEKDTIFIRMAASELPGNGDSEKVNTKSNAKKRIVVSTVLSTGLV FLGLALVLLLHVWRKQQQKKRNLPSGSNNKDMKEELELPFFNMDELASATNNFSDANKVGAGGFGPVYKGTLADGREIAVKRLSKNSRQGLDEFKNEVKH IVKLQHRNLVRLLGCCIERDEKMLVYEFLPNKSLDFYIFDETHSLLLDWRQRYNIINGIARGLLYLHQDSRLRIIHRDLKTSNILLDYEMNPKISDFGLA RSFGENETEASTNKVAGTYGYISPEYANYGLYSLKSDVFSFGVLVLEIVSGYRNRGFSHPDHHLNLIGHAWILFKQGRSLELVGESKVETPYLSEVLRSI HVGLLCVQENTEDRPNMSYVVLMLGNEDELPQPKQPGFFTERDLIEACYSSSQCKPPSANECSISLLEAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27290			S-locus lectin protein kinase ...		Potri.010G025700 [exp]	0	1
AT4G27290			S-locus lectin protein kinase ...		Potri.010G025800 [exp]	1.41	0.9786
AT4G27290			S-locus lectin protein kinase ...		Potri.010G025500 [exp]	2.00	0.9749
AT4G27290			S-locus lectin protein kinase ...		Potri.010G025601 [exp]	2.44	0.9261
AT4G08850			Leucine-rich repeat receptor-l...		Potri.019G129400 [exp]	3.46	0.8613
AT5G09220		AAP2	amino acid permease 2 (.1)		Potri.009G133600 [exp]	5.00	0.8514
AT2G02820	MYB	ATMYB88	myb domain protein 88 (.1.2)		Potri.008G148400 [exp]	7.14	0.7811	MYB124.1
AT2G30090			Acyl-CoA N-acyltransferases (N...		Potri.001G279400 [exp]	8.36	0.7990
AT2G32660		AtRLP22	receptor like protein 22 (.1)		Potri.001G437800 [exp]	8.83	0.8259
AT2G37730			Protein of unknown function (D...		Potri.016G101200 [exp]	9.53	0.8221
AT3G47570			Leucine-rich repeat protein ki...		Potri.005G031300 [exp]	12.32	0.8195

Compare expression of checked genes

Potri.010G025700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.