Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SPL7.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18830 664 / 0 SBP ATSPL7, SPL7 squamosa promoter binding protein-like 7 (.1.2.3) AT2G47070 118 / 3e-27 SBP SPL1 squamosa promoter binding protein-like 1 (.1) AT3G60030 105 / 3e-23 SBP SPL12 squamosa promoter-binding protein-like 12 (.1) AT1G20980 105 / 4e-23 SBP ATSPL14, SPL1R2, FBR6, SPL14 squamosa promoter binding protein-like 14 (.1) AT1G76580 103 / 2e-22 SBP SPL16 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT1G53160 87 / 2e-19 SBP SPL4 squamosa promoter binding protein-like 4 (.1.2) AT2G33810 81 / 5e-18 SBP SPL3 squamosa promoter binding protein-like 3 (.1) AT1G02065 85 / 1e-17 SBP SPL8 squamosa promoter binding protein-like 8 (.1.2) AT3G57920 84 / 3e-17 SBP SPL15, MSC1 squamosa promoter binding protein-like 15 (.1) AT1G69170 83 / 1e-16 SBP SPL6 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G197000 [exp] 1249 / 0 AT5G18830 657 / 0.0 squamosa promoter binding protein-like 7 (.1.2.3) Potri.014G114300 [exp] 141 / 2e-34 AT3G60030 962 / 0.0 squamosa promoter-binding protein-like 12 (.1) Potri.008G098600 [exp] 130 / 5e-31 AT2G47070 833 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.010G154000 [exp] 130 / 1e-30 AT2G47070 614 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.002G188700 [exp] 126 / 1e-29 AT2G47070 972 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.002G002400 [exp] 125 / 2e-29 AT1G20980 970 / 0.0 squamosa promoter binding protein-like 14 (.1) Potri.005G258700 [exp] 122 / 2e-28 AT1G20980 966 / 0.0 squamosa promoter binding protein-like 14 (.1) Potri.002G142200 [exp] 87 / 4e-18 AT1G02065 243 / 8e-79 squamosa promoter binding protein-like 8 (.1.2) Potri.014G057700 [exp] 86 / 4e-18 AT1G02065 247 / 3e-80 squamosa promoter binding protein-like 8 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012782 [exp] 750 / 0 AT5G18830 669 / 0.0 squamosa promoter binding protein-like 7 (.1.2.3) Lus10033993 [exp] 749 / 0 AT5G18830 661 / 0.0 squamosa promoter binding protein-like 7 (.1.2.3) Lus10009984 [exp] 121 / 7e-28 AT2G47070 921 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10038043 [exp] 112 / 4e-25 AT2G47070 896 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10010071 [exp] 110 / 1e-24 AT2G47070 631 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10016275 [exp] 84 / 4e-17 AT2G42200 179 / 1e-53 squamosa promoter binding protein-like 9 (.1) Lus10028181 [exp] 83 / 9e-17 AT1G02065 224 / 4e-71 squamosa promoter binding protein-like 8 (.1.2) Lus10012020 [exp] 84 / 2e-16 AT2G42200 177 / 5e-51 squamosa promoter binding protein-like 9 (.1) Lus10042882 [exp] 82 / 2e-16 AT1G02065 225 / 2e-71 squamosa promoter binding protein-like 8 (.1.2) Lus10004523 [exp] 82 / 8e-16 AT3G60030 499 / 5e-163 squamosa promoter-binding protein-like 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [poplar] [flax] SBP SBP domain
Representative CDS sequence Show only first row Show all	>Potri.010G026200.1 pacid=42800002 polypeptide=Potri.010G026200.1.p locus=Potri.010G026200 ID=Potri.010G026200.1.v4.1 annot-version=v4.1 ATGGAGACCTCCTCCTCCTCCTCTCCTCCTCCTCCCCCACCACCACAACACGACGGCGACATGGAAATCCACCTTCCTCCGGTCACCACCGAATGGGACT GGGGCGATCTCCTGGACTTCACCGTGGACGATCAATTCCCTCTCTCTTTCGATACAGTTGTTGACGTCACACAACCTATTGACAACCCAACGCCTGAAGT CGAGTCTCAACAGCTTGAAGCTCCTGTTTCTGATCGGGTAAGGAAGCGAGACCCGAGGTTGACTTGCTCCAATTTTCTGGCGGGTATAGTACCGTGTGCG TGTCCGGAGATGGATGAATTATTACTAGAGGAAGAGGCTGCTCTACCTGGAAAAAAACGGGTGAGGGTTGCTCGTGCCGGGTCGAGTATTGCTAGGTGTC AAGTACCGAGTTGTGAAGCGGATATTAGTGAACTTAAAGGGTATCATAGAAGACACAGGGTCTGTTTAGGGTGTGCTAATGCTACTGCTGTTGTACTTGA TGGGGAAACTAAAAGATACTGTCAACAGTGTGGCAAGTTTCATGTGTTATCGGATTTTGACGAAGGGAAAAGGAGTTGTAGAAGGAAATTAGAGAGGCAT AATAATAGAAGGAGAAGGAAGCCAGCTGATTCTAGTAAGGGCAGTGCAGGTGATAAGGAAGTTCATGGGGATTTGCTAACTGAAGATACTACTTGTGATG CTGAAGCTGGCAAAGATGGTTTGTGGTCCAGTAGTCAGATGGTGGAGAAAGAAGGGTTGGTTGAGTCTGAAGATGGACACATTTCAGCCTTGAACTCTGA TCCTATTTCTCAAAATGTTAATAGTGATAGTGGAGTCTCTTTCACGGCTTCCGGGGACACGCGAATGGATTGTGGGAAAGATGATTCCAAACTTCCATTT TCTCCTTCAATTTGTGACAACAAGAGTGCTTACTCATCCGTGTGCCCGACAGGTCGGATCTCATTCAAGCTTTATGATTGGAATCCGGCAGAATTCCCTA GAAGGCTTCGACATCAAATATTCCAATGGTTGGCCAGTATGCCTGTGGAGTTAGAGGGATATATTCGGCCGGGATGTACAATCCTGACTGCATTTCTAGC AATGCCAACATTTATGTGGGTGAAGTTACTTGAAGATCCTGCATCATATTTGAATGACCTTCTTGGTAGTGGAAAAATGCTGTCTAAAAAGGGTCGAATG CGTGTTTATCTTAATAACATGATCTTCAATGTCACAAAAGATGGACATTCCGTGATGAAAGTCAATGTGAAAGGGCATGCCCCAAGACTTCACTATGTTC ATCCTACATGTTTTGAGGCTGGAAAGCCCATGGAGTTTGTTGTTTGTGGAAGTAATTTGTTGCAGCCCAAATTTCGGTTTCTGGTATCTTTTGCTGGGAA GTATCTTGCGCATGATTATTGTGTTGCATTACCACAAGTTCATACCAAAGGAGGTTCAGGTCTTCACCATCAGCTGTACAAAATACTTACCCATTGTATT GAACCTAATCTCTTAGGTCCTTTATTTATTGAGGTTGAGAATGAGAGTGGCTTATCAAATTTTATTCCTGTGCTTATTGGGGACAGAGATGTTTGTTCTG AAATGAAAATAATTCAGCAGAGATTTGATGTATCCCATTCATTGATTTTTGGCTCAGAGTGTGAGGTTTCTGCAATGAGACAAACAGCTTTTTCAGAGTT TAGCACGGACATAGCTTGGTTACTAAAGGAGCCTTCAGCAGAAAATTTTCAACAAACAATAACTTCTTTTCAGATTCGAAGATTCAATTCTTTGTTGAGT TTCTTGTTACATCATGAATCAATCATCATTTTGGATAGGATATTAAAAAACCTGGAGATCATGATGGACAAAAGGGAGGTCAATGGTATGTTTGATGACA CTAGTGACACTAATATGAGGCTATTACAGAGTTACATGGAGTACGCAAGCAATATTCTTCATAAAAAAAAGAGAAGTGAAGTTTTGAAGCATCACTTGGA ATGTCCTGGACAGGAGTATTGCGTTTCAGGAAGCTGCTGTGTAAGCAACAAGCCAGCAGTTGTTATCTCCAGTGAGGGCTTGGAGCAAAGACCAGATGGA GGTTTGGGAGTGATGGCAAACTCCAAATGTATTGTTAAAAGCGAGGAGGTTCCCCTTTTCAACAGAGACGAGAGGCCAAAGAAATCATGTGGTCTCGTTT TCTCTAACAGAGTCTTGAAGTATCGGCCTTCAGTGTTTGTAATTGCTATTATTGCCGTATGTTTTGCAGTATGCGCCCTTCTTCTCCACCCGCGAAAGGT TAGCAAACTTGCAGTATCTATACGCAGGTGCTTGACAGACAGATATTAG
AA sequence Show only first row Show all	>Potri.010G026200.1 pacid=42800002 polypeptide=Potri.010G026200.1.p locus=Potri.010G026200 ID=Potri.010G026200.1.v4.1 annot-version=v4.1 METSSSSSPPPPPPPQHDGDMEIHLPPVTTEWDWGDLLDFTVDDQFPLSFDTVVDVTQPIDNPTPEVESQQLEAPVSDRVRKRDPRLTCSNFLAGIVPCA CPEMDELLLEEEAALPGKKRVRVARAGSSIARCQVPSCEADISELKGYHRRHRVCLGCANATAVVLDGETKRYCQQCGKFHVLSDFDEGKRSCRRKLERH NNRRRRKPADSSKGSAGDKEVHGDLLTEDTTCDAEAGKDGLWSSSQMVEKEGLVESEDGHISALNSDPISQNVNSDSGVSFTASGDTRMDCGKDDSKLPF SPSICDNKSAYSSVCPTGRISFKLYDWNPAEFPRRLRHQIFQWLASMPVELEGYIRPGCTILTAFLAMPTFMWVKLLEDPASYLNDLLGSGKMLSKKGRM RVYLNNMIFNVTKDGHSVMKVNVKGHAPRLHYVHPTCFEAGKPMEFVVCGSNLLQPKFRFLVSFAGKYLAHDYCVALPQVHTKGGSGLHHQLYKILTHCI EPNLLGPLFIEVENESGLSNFIPVLIGDRDVCSEMKIIQQRFDVSHSLIFGSECEVSAMRQTAFSEFSTDIAWLLKEPSAENFQQTITSFQIRRFNSLLS FLLHHESIIILDRILKNLEIMMDKREVNGMFDDTSDTNMRLLQSYMEYASNILHKKKRSEVLKHHLECPGQEYCVSGSCCVSNKPAVVISSEGLEQRPDG GLGVMANSKCIVKSEEVPLFNRDERPKKSCGLVFSNRVLKYRPSVFVIAIIAVCFAVCALLLHPRKVSKLAVSIRRCLTDRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18830	SBP	ATSPL7, SPL7	squamosa promoter binding prot...		Potri.010G026200 [exp]	0	1	SPL7.1
AT2G36720			Acyl-CoA N-acyltransferase wit...		Potri.016G097300 [exp]	3.31	0.8828
AT5G49430			WD40/YVTN repeat-like-containi...		Potri.010G142700 [exp]	5.74	0.8168
AT3G49725			GTP-binding protein, HflX (.1)		Potri.007G007700 [exp]	5.83	0.8210
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Potri.013G035600 [exp]	8.36	0.7861	XRN4.2
AT1G20760			Calcium-binding EF hand family...		Potri.007G063200 [exp]	12.64	0.7976
AT1G66730		AtLIG6	DNA LIGASE 6 (.1)		Potri.004G094200 [exp]	15.49	0.7941
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Potri.003G220800 [exp]	22.97	0.7992
AT1G16540		ACI2, ABA3, SIR...	SIRTINOL RESISTANT 3, LOW OSMO...		Potri.007G066400 [exp]	23.81	0.7966	Pt-ABA3.1
AT2G39580			unknown protein		Potri.010G208200 [exp]	28.72	0.7774
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Potri.002G024100 [exp]	38.15	0.7718	XRN2.1

Compare expression of checked genes

Potri.010G026200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.