Plant FIBer expression Database

Potri.010G026350 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G165240
[exp]
283 / 4e-88 AT5G28780 171 / 1e-46 PIF1 helicase (.1)
Potri.012G032376
[exp]
251 / 9e-77 ND /
Potri.001G185950
[exp]
251 / 2e-76 AT5G28780 213 / 3e-61 PIF1 helicase (.1)
Potri.011G042150
[exp]
220 / 7e-66 AT5G28780 174 / 1e-47 PIF1 helicase (.1)
Potri.009G002650
[exp]
210 / 2e-62 AT5G28780 154 / 1e-40 PIF1 helicase (.1)
Potri.013G071501
[exp]
210 / 3e-62 AT5G28780 127 / 1e-31 PIF1 helicase (.1)
Potri.006G157501
[exp]
94 / 5e-22 AT5G28780 196 / 2e-57 PIF1 helicase (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.010G026350.1 pacid=42798209 polypeptide=Potri.010G026350.1.p locus=Potri.010G026350 ID=Potri.010G026350.1.v4.1 annot-version=v4.1
ATGAGAGATAATGCACTGTTGTCTTTGAATGAAGACATTGTTTGTGGTCTTATGAAGATGCTTGATGGAACAAACGAGCTGGTAAAGTTGTTTAGGAATG
CAAAACAAAGAAATGCAAATTCTGAATGTCCTAGCTATACAATTTGCTTGCTTGGGAAAAGAGATGGTGATTTGCGGCAATATGATACTCCTTCATCAAA
TGATGTTAGTGGCTTGGTTGTTGGAGATATTGGGGATTTTTGTTCCAAACATGACATCATTATTGAAAGTTGTTCTGGTTCTTTGCAAAGGATTTCAAAG
TTATATCCGAAGTTTATGTCTCTACAATATCCTTTGTTGTTTCCCTATGGCAAATATGGATATCAGTGCGATATTATGTTTGCCAACAATGACCAACAAT
CATTGAGGAAACGCTTAAGAGTCCCAATGAGAGCTTATTATGCTTCCCTCATTAATGAAATAGTTGGGTTCAAGAATATCATCATCAAAGGTGGCTACAC
CAACAATTTCTGGTTGATGCAACGTGATTGCATCAGAGCTAACCAAAATGATCTTAGAACTGAAGTCTATAAAGGCATTCATGAAGCTGTTTTAAAGGGG
GATGTTGATGGGAACGCAACTAGAAAAGTTATTGTTCCCTCTTCTTTGAATGGTAGTCCACATTATACGATTAATAATTATCAAGATGCCTATATGCAGG
ACTTATGA
AA sequence
>Potri.010G026350.1 pacid=42798209 polypeptide=Potri.010G026350.1.p locus=Potri.010G026350 ID=Potri.010G026350.1.v4.1 annot-version=v4.1
MRDNALLSLNEDIVCGLMKMLDGTNELVKLFRNAKQRNANSECPSYTICLLGKRDGDLRQYDTPSSNDVSGLVVGDIGDFCSKHDIIIESCSGSLQRISK
LYPKFMSLQYPLLFPYGKYGYQCDIMFANNDQQSLRKRLRVPMRAYYASLINEIVGFKNIIIKGGYTNNFWLMQRDCIRANQNDLRTEVYKGIHEAVLKG
DVDGNATRKVIVPSSLNGSPHYTINNYQDAYMQDL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.010G026350
[exp]
0 1
AT5G24450 Transcription factor IIIC, sub... Potri.007G145000
[exp]
1.41 0.9110
AT3G42670 CLSY1, CLSY, CH... CLASSY 1, CLASSY1, chromatin r... Potri.010G183832
[exp]
3.87 0.8596
AT4G28880 CKL3 casein kinase I-like 3 (.1) Potri.018G041000
[exp]
4.24 0.8855
AT1G73875 DNAse I-like superfamily prote... Potri.012G057100
[exp]
5.65 0.8399
AT3G53270 Small nuclear RNA activating c... Potri.004G126760
[exp]
8.77 0.8506
AT5G01270 CPL2, ATCPL2 carboxyl-terminal domain (ctd)... Potri.006G099302
[exp]
8.83 0.8330
AT5G24490 30S ribosomal protein, putativ... Potri.011G055100
[exp]
14.69 0.8047
AT5G53450 ORG1 OBP3-responsive gene 1 (.1.2) Potri.015G016500
[exp]
16.73 0.7781
AT5G58510 unknown protein Potri.001G280900
[exp]
17.32 0.8355
AT4G02210 unknown protein Potri.002G200600
[exp]
18.16 0.7781

Potri.010G026350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.