Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18840 686 / 0 Major facilitator superfamily protein (.1) AT2G48020 548 / 0 Major facilitator superfamily protein (.1.2) AT3G05150 520 / 0 Major facilitator superfamily protein (.1) AT1G54730 494 / 1e-172 Major facilitator superfamily protein (.1.2.3) AT3G20460 422 / 3e-144 Major facilitator superfamily protein (.1) AT1G08930 409 / 9e-139 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT1G08920 407 / 2e-138 ESL1 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) AT5G27350 405 / 1e-137 SFP1 Major facilitator superfamily protein (.1) AT3G05165 403 / 5e-137 Major facilitator superfamily protein (.1.2.3.4.5) AT3G05160 395 / 3e-134 Major facilitator superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G212900 [exp] 575 / 0 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.014G136600 [exp] 545 / 0 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.013G027500 [exp] 525 / 0 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.005G039900 [exp] 460 / 2e-159 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.005G037000 [exp] 442 / 7e-152 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027700 [exp] 441 / 8e-152 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.005G040000 [exp] 422 / 4e-144 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.013G027800 [exp] 407 / 2e-138 AT5G27360 405 / 6e-138 Major facilitator superfamily protein (.1) Potri.007G024300 [exp] 387 / 1e-130 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012780 [exp] 714 / 0 AT5G18840 685 / 0.0 Major facilitator superfamily protein (.1) Lus10029629 [exp] 564 / 0 AT2G48020 661 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008183 [exp] 553 / 0 AT2G48020 657 / 0.0 Major facilitator superfamily protein (.1.2) Lus10027975 [exp] 528 / 0 AT2G48020 626 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008184 [exp] 502 / 4e-176 AT2G48020 593 / 0.0 Major facilitator superfamily protein (.1.2) Lus10042676 [exp] 494 / 5e-173 AT2G48020 603 / 0.0 Major facilitator superfamily protein (.1.2) Lus10035354 [exp] 494 / 2e-172 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3) Lus10008179 [exp] 490 / 9e-172 AT2G48020 590 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008182 [exp] 485 / 7e-169 AT2G48020 613 / 0.0 Major facilitator superfamily protein (.1.2) Lus10027976 [exp] 476 / 5e-166 AT2G48020 598 / 0.0 Major facilitator superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.010G026500.1 pacid=42799054 polypeptide=Potri.010G026500.1.p locus=Potri.010G026500 ID=Potri.010G026500.1.v4.1 annot-version=v4.1 ATGACTATTAAGCTACAGGGAGATGTTGAGCAAGGTGAAATCATTGGCCTTGAAGACTTGGAAAAGCCATTGATCTTCGAGGAGAAAATTGTTGTGATTA ATGATAATAATGAAACTGATCAAGATCAAGAGAGTACTGGATCCATTGGGATGGTTTTGCTATGCACATTTGTTGCTGTTTGTGGTTCTTTTGAATTTGG CTCTTGTGTGGGTTATTCAGCTCCCACGCAATCTGCAATCAGGGAAGATCTTAATCTCTCAATAGCTGAGTACTCTATGTTCGGCTCTATATTAACCATT GGTGCAATGCTTGGTGCTATCACAAGTGGCCGGATTGCAGACTTTATTGGTCGGAAAGGGGCAATGAGAATGTCAGCTTGCTTCTGCATCACAGGATGGC TAGCAGTCTTCTTCTCTAGAGGACCTTTTTCACTTGATGTGGGAAGGATTCTAACAGGATATGGCATTGGAGTTTTCTCTTACGTGGTTCCAATATTTAT AGCAGAAATAGCACCAAAGAATCTCCGTGGAGGGCTCACCACATTAAATCAGCTCATGATCGTTACTGGCTCGTCCACTGCATTCTTAATTGGATCGGTT ATAACATGGAGAGGACTAGCTCTAACTGGTCTTGTTCCCTGCATTTTCCTGCTTGTTGGTCTATGTTTCGTTCCCGAGTCTCCCAGATGGCTGGCAAAAG TTGGCCTCCAGAAAGAATTCCGAGTTGCACTGCAGAAACTACGTGGAAAAGATGCTGATGTTACTCGTGAAGCTGCTGAAATCCAAGTTTACCTTGAAAA TCTTCAAGCCCTTCCTAAAGCTAAACTTCTCAATTTGTTCGAAAGCAAATACATCCGTTCTGTTATTATTGGAGTGGCGTTAATGGTTTTCCAACAATTT GGAGGAATTAATGGCATTGGATTTTATGCAAGCGAAACCTTTGCTTCAGCTGGACTTTCTTCAGCAAAAATCGGAACCATAGCATATGCTTGCATTCAGA TCCCAATAACCATGCTGGGAGCAATTTTAATGGACAAATCTGGGAGACGACCACTTATGATGATCTCTTCCACTGGAACATTTCTAGGCTCTTTCTTAGC AGGAACTTCTTTCTTTCTCAAGGGGCAGGGCTTGTTGCTTGAGTGGGTACCAATATTAACCATCGCAGGAGTGCTGATTTATGTATCAGCATTCTCAATT GGAATGGGAGCAGTTCCCTGGGTGATCATGTCTGAGATTTTTCCAATTAACATAAAGGGGATTGCTGGGAGCTTGGTGGTGCTAGTGAACTGGTCGGGGG CATGGGCAGTTTCTTTTACCTTCAACTTTCTCATGGACTGGAGTTCCTCAGGTACATTCTTGGTGTACTCGGGATTCTCAGTGCTAACAGTTCTTTACGT GGCCAAGTTTGTGCCAGAAACCAAAGGAAAAACACTGGAAGAAATCCAGAAAAGTATCAATTCATAG
AA sequence Show only first row Show all	>Potri.010G026500.1 pacid=42799054 polypeptide=Potri.010G026500.1.p locus=Potri.010G026500 ID=Potri.010G026500.1.v4.1 annot-version=v4.1 MTIKLQGDVEQGEIIGLEDLEKPLIFEEKIVVINDNNETDQDQESTGSIGMVLLCTFVAVCGSFEFGSCVGYSAPTQSAIREDLNLSIAEYSMFGSILTI GAMLGAITSGRIADFIGRKGAMRMSACFCITGWLAVFFSRGPFSLDVGRILTGYGIGVFSYVVPIFIAEIAPKNLRGGLTTLNQLMIVTGSSTAFLIGSV ITWRGLALTGLVPCIFLLVGLCFVPESPRWLAKVGLQKEFRVALQKLRGKDADVTREAAEIQVYLENLQALPKAKLLNLFESKYIRSVIIGVALMVFQQF GGINGIGFYASETFASAGLSSAKIGTIAYACIQIPITMLGAILMDKSGRRPLMMISSTGTFLGSFLAGTSFFLKGQGLLLEWVPILTIAGVLIYVSAFSI GMGAVPWVIMSEIFPINIKGIAGSLVVLVNWSGAWAVSFTFNFLMDWSSSGTFLVYSGFSVLTVLYVAKFVPETKGKTLEEIQKSINS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18840			Major facilitator superfamily ...		Potri.010G026500 [exp]	0	1
AT5G01750			Protein of unknown function (D...		Potri.016G131300 [exp]	2.44	0.8568
AT4G25240		SKS1	SKU5 similar 1 (.1)		Potri.015G127200 [exp]	4.89	0.8096	SKS1.3
AT5G01750			Protein of unknown function (D...		Potri.016G131701 [exp]	5.00	0.8124
AT5G35670		IQD33	IQ-domain 33 (.1)		Potri.014G161000 [exp]	5.29	0.8258
AT3G60750			Transketolase (.1.2)		Potri.010G224600 [exp]	8.83	0.7565
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Potri.013G073000 [exp]	9.38	0.7766
					Potri.012G106675 [exp]	12.00	0.8051
AT1G21740			Protein of unknown function (D...		Potri.004G177200 [exp]	12.24	0.8219
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Potri.014G102700 [exp]	14.56	0.8209	Pt-CYP78.2
AT3G14470			NB-ARC domain-containing disea...		Potri.017G136400 [exp]	15.09	0.7807

Compare expression of checked genes

Potri.010G026500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.