Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03020 676 / 0 transducin family protein / WD-40 repeat family protein (.1.2) AT2G43770 95 / 3e-21 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 85 / 5e-18 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 73 / 2e-13 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G08390 72 / 4e-13 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 72 / 6e-13 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 69 / 3e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08560 69 / 4e-12 transducin family protein / WD-40 repeat family protein (.1.2) AT4G02730 66 / 1e-11 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G50230 66 / 2e-11 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G197200 [exp] 699 / 0 AT4G03020 534 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.014G136000 [exp] 681 / 0 AT4G03020 741 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.019G096900 [exp] 95 / 4e-21 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 80 / 3e-16 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 74 / 2e-14 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 75 / 5e-14 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G051900 [exp] 72 / 1e-13 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 72 / 5e-13 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G058000 [exp] 71 / 7e-13 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012779 [exp] 694 / 0 AT4G03020 629 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10033996 [exp] 687 / 0 AT4G03020 629 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10042682 [exp] 667 / 0 AT4G03020 749 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10029621 [exp] 597 / 0 AT4G03020 658 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10012230 [exp] 87 / 1e-18 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 86 / 3e-18 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 84 / 2e-17 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 79 / 9e-16 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 78 / 7e-15 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 78 / 7e-15 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.010G026800.1 pacid=42797456 polypeptide=Potri.010G026800.1.p locus=Potri.010G026800 ID=Potri.010G026800.1.v4.1 annot-version=v4.1 ATGAGTAGGACACGCAAGAGTAGTAATTTATGTGATGATAAAATTGCTGGCAAGGGATCCTCTACAAGTCAAGGACCCAATGAGGTTTCTGATTATCTTG ATCATGAGATTGCTCAACTCACAAAGCTCAGGTCACGGCCTCATGAACTTTTGAGCAGGGACGTGCCTGGCAGGTCGAGGCTGCCCGTCTCAACTATGAG AATGCTGGTTGGTCGAGAGGGTAATTATTCCGGAAGAGGGAGATTCTCATCTGCAGATAGTCGTCATGTTTTAAGTCGATATTTGCCTGTACATGGTCCT TGCACGGTGGACCAATTGAATAGTCGGACTTATGTTTCTCAGTTTTCAGATGATGGAACTCTTTTTGTTGCTGGATGCCAGGGAAGCCACATTAGGATAT ATAATGTGGACAAGGGATGGAAAATTCAGAAGGACATTTTAGCCAAGAGTTTAAGATGGACAATTACCGATACATGTCTTTCGCCCAATCAGCGCTACCT TGTGTATGCTAGTTTGTCACCTGTTGTCCATATTGTGGATATTGGATCTGCTGCAACAGAGTCACTAGCAAATGTAACGGAAATTCATAATGGTTTGGAT TTTTCTGTCGATAACGATGATTATGATGAATTTGGGATCTTCTCTGTGAAGTTTTCAACTGATGGGCGAGAGCTTGTAGCTGCAAGTAGTGATAATTCAA TATATATTTATGATCTTGAAGCAAATACCTGCAGTCTCCGAGTTCCTGCACATAAGTCTGATGTCAACACAGTATGTTTTGCGGATGAAGCTGGCCATCT CTTGTATTCGGGAAGTGATGATAACCTCTGTAAGGTGTGGGATAGGCGTTGCTTTATCTCAAAAGGAAAAGCAGCAGGGGTCTTGATGGGACATCTAGAA GGCATTACATTCGTAGACAGCCGTGGAGATGGGCGTTATTTTATTTCTAATGGAAAGGATCAGACTACCAAACTATGGGATATTCGAAAGATGTCCTCTA ATGCCAAAGAGTACACTCCAAGGCTTAGAGATTCTGACTGGGATTATAGATGGATGGAGTACCCACCCCATGCCAAAATCTTGAAGCATCCTCGTGATCA GTCTGTGACCACTTACAGAGGTCATTCAATCTTGCGCACTCTCATTCGCTGTTACTTCTCTCCGGAATATAGCACCGGCCAGAAGTACATTTACACTGGA TCTAGTGACTGTTCTGTTTATATTTATGATCTGGTAAGTGGAGCCCTAGTTGCAACACTCGATCATCATGAAGGTCTTGTAAGAGATTGTAGCTGGCATC CTCTGTACCCTATGATAATCAGCTCTTCTTGGGATGGTGTCATTGCCAGATGGGAATTTCCTGGCAGTGGTGAAGCCCCTACTCCGGTGGTGAGACGAAG GTCAAGTCTGAGGCGGGATCTCTAG
AA sequence Show only first row Show all	>Potri.010G026800.1 pacid=42797456 polypeptide=Potri.010G026800.1.p locus=Potri.010G026800 ID=Potri.010G026800.1.v4.1 annot-version=v4.1 MSRTRKSSNLCDDKIAGKGSSTSQGPNEVSDYLDHEIAQLTKLRSRPHELLSRDVPGRSRLPVSTMRMLVGREGNYSGRGRFSSADSRHVLSRYLPVHGP CTVDQLNSRTYVSQFSDDGTLFVAGCQGSHIRIYNVDKGWKIQKDILAKSLRWTITDTCLSPNQRYLVYASLSPVVHIVDIGSAATESLANVTEIHNGLD FSVDNDDYDEFGIFSVKFSTDGRELVAASSDNSIYIYDLEANTCSLRVPAHKSDVNTVCFADEAGHLLYSGSDDNLCKVWDRRCFISKGKAAGVLMGHLE GITFVDSRGDGRYFISNGKDQTTKLWDIRKMSSNAKEYTPRLRDSDWDYRWMEYPPHAKILKHPRDQSVTTYRGHSILRTLIRCYFSPEYSTGQKYIYTG SSDCSVYIYDLVSGALVATLDHHEGLVRDCSWHPLYPMIISSSWDGVIARWEFPGSGEAPTPVVRRRSSLRRDL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03020			transducin family protein / WD...		Potri.010G026800 [exp]	0	1
AT5G56180		ATARP8	actin-related protein 8 (.1.2)		Potri.001G471700 [exp]	1.00	0.8032	ARP8.2,ARP908
AT1G11440			unknown protein		Potri.011G032700 [exp]	2.44	0.7743
AT5G60550		ATSNAK1, GRIK2	geminivirus rep interacting ki...		Potri.009G012900 [exp]	6.00	0.7195
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Potri.010G180600 [exp]	8.12	0.7277
AT4G16370		ATOPT3	oligopeptide transporter (.1)		Potri.006G006000 [exp]	8.30	0.7016	OPT3.2
AT4G28690			unknown protein		Potri.002G255400 [exp]	9.38	0.7201
AT2G39970		PXN, PMP38, APE...	peroxisomal NAD carrier, perox...		Potri.010G192600 [exp]	10.39	0.7034
AT1G64850			Calcium-binding EF hand family...		Potri.013G072600 [exp]	11.87	0.7594
AT4G36960			RNA-binding (RRM/RBD/RNP motif...		Potri.005G138600 [exp]	14.14	0.6741
AT3G53690			RING/U-box superfamily protein...		Potri.013G120300 [exp]	15.36	0.7392

Compare expression of checked genes

Potri.010G026800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.