Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02040 54 / 3e-09 unknown protein AT3G21570 39 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G198000 [exp] 209 / 7e-69 AT4G02040 56 / 9e-10 unknown protein Potri.018G022400 [exp] 41 / 0.0002 AT4G32020 62 / 2e-12 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012773 [exp] 138 / 1e-40 AT3G21570 67 / 7e-14 unknown protein Lus10034002 [exp] 138 / 1e-40 AT3G21570 70 / 5e-15 unknown protein Lus10019069 [exp] 63 / 5e-12 AT4G02040 64 / 8e-13 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF15365 [poplar] [flax] PNRC Proline-rich nuclear receptor coactivator motif
Representative CDS sequence Show only first row Show all	>Potri.010G027500.1 pacid=42799026 polypeptide=Potri.010G027500.1.p locus=Potri.010G027500 ID=Potri.010G027500.1.v4.1 annot-version=v4.1 ATGGGGACTGAGGTTGCAAGGCCACAAGATTGCCTGATTGAAAGAATCAGAGTTTCTCCCTGTCGTCGGAGAAATTATTACTATGGAAACGGAAACGTTT CTAACCCTAACGCTTATAGCACTAACAGCTACTGCAACAACAGCAACCCTAGGTTTAACAGAAAACCAACAGCGGTTCGGTTTGAGAGATCGGGCCAGAG AAAGAAACAACCAGAGCCGTCGATTTCAAAGAAATCAGGCACTGTTGATGATCTCAAGATCCCCAGGAACAACAAGGTGATGGAGAAAGTTACGATTTTA CGGAGAGGAGAGTCGCTAGACACGAAGATCAAGAGCAGCGACACTGCGTCCTTGAAGAAGGAACAAGGAAATGGTGGTGATTTTGTTGTTGCTAGCACGG ACCGATTGGGTCCGGACCCCAAGGTGGTTTCAAAACAGATCAGGATCGTGGATCTGAGGTCTCCGGTGAATGGAAAGTGTGATATGTACGCCGGATCGGC TTTTGCAGTGTCCCCGGCGCCGAGTTCGCTTCCTTTGCCGTCTTTTTCGAAGAAGAAGCAGGTTTCAATTGATGACTCGGCCACCAGAGATCTAAGGCGT TTGCTTCGACTCGAATGTTGA
AA sequence Show only first row Show all	>Potri.010G027500.1 pacid=42799026 polypeptide=Potri.010G027500.1.p locus=Potri.010G027500 ID=Potri.010G027500.1.v4.1 annot-version=v4.1 MGTEVARPQDCLIERIRVSPCRRRNYYYGNGNVSNPNAYSTNSYCNNSNPRFNRKPTAVRFERSGQRKKQPEPSISKKSGTVDDLKIPRNNKVMEKVTIL RRGESLDTKIKSSDTASLKKEQGNGGDFVVASTDRLGPDPKVVSKQIRIVDLRSPVNGKCDMYAGSAFAVSPAPSSLPLPSFSKKKQVSIDDSATRDLRR LLRLEC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02040			unknown protein		Potri.010G027500 [exp]	0	1
AT1G19210	AP2_ERF		Integrase-type DNA-binding sup...		Potri.018G047300 [exp]	4.79	0.7967
AT3G12630		SAP5	stress associated protein 5, A...		Potri.009G063900 [exp]	13.41	0.7959
AT3G23750			Leucine-rich repeat protein ki...		Potri.013G035900 [exp]	13.96	0.6882
AT1G10020			Protein of unknown function (D...		Potri.005G150100 [exp]	14.07	0.7119
AT1G65610		ATGH9A2 ,KOR2	KORRIGAN 2, ARABIDOPSIS THALIA...		Potri.010G177300 [exp]	18.33	0.6706
AT2G29060	GRAS		GRAS family transcription fact...		Potri.001G242100 [exp]	19.89	0.7429
AT1G13110		CYP71B7	"cytochrome P450, family 71 su...		Potri.015G094900 [exp]	20.44	0.6831
AT5G25810	AP2_ERF	TNY, TINY	TINY, Integrase-type DNA-bindi...		Potri.019G067400 [exp]	25.51	0.7249
					Potri.001G198800 [exp]	25.78	0.7289
AT1G36050			Endoplasmic reticulum vesicle ...		Potri.001G206100 [exp]	28.98	0.7250

Compare expression of checked genes

Potri.010G027500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.