Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21550 202 / 1e-66 AtDMP2 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) AT3G21520 160 / 4e-50 AtDMP1 Arabidopsis thaliana DUF679 domain membrane protein 1, DUF679 domain membrane protein 1 (.1) AT5G46090 123 / 2e-35 Protein of unknown function (DUF679) (.1) AT4G18425 117 / 4e-33 Protein of unknown function (DUF679) (.1) AT3G02430 110 / 4e-30 Protein of unknown function (DUF679) (.1) AT4G24310 109 / 5e-30 Protein of unknown function (DUF679) (.1) AT1G09157 83 / 1e-19 Protein of unknown function (DUF679) (.1) AT5G39650 81 / 6e-19 DAU2 DUO1-activated unknown 2, Protein of unknown function (DUF679) (.1) AT5G27370 79 / 2e-18 Protein of unknown function (DUF679) (.1) AT4G28485 49 / 1e-07 AtDMP7 Arabidopsis thaliana DUF679 domain membrane protein 7, DUF679 domain membrane protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G115100 [exp] 269 / 3e-93 AT3G21550 213 / 9e-71 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) Potri.017G016300 [exp] 128 / 2e-37 AT4G18425 203 / 2e-66 Protein of unknown function (DUF679) (.1) Potri.011G058000 [exp] 125 / 5e-36 AT4G18425 247 / 8e-84 Protein of unknown function (DUF679) (.1) Potri.004G049000 [exp] 125 / 9e-36 AT4G18425 276 / 6e-95 Protein of unknown function (DUF679) (.1) Potri.013G116300 [exp] 107 / 3e-29 AT3G02430 94 / 9e-24 Protein of unknown function (DUF679) (.1) Potri.003G008600 [exp] 107 / 5e-29 AT3G02430 185 / 6e-59 Protein of unknown function (DUF679) (.1) Potri.013G027200 [exp] 96 / 8e-25 AT5G27370 153 / 5e-47 Protein of unknown function (DUF679) (.1) Potri.004G223500 [exp] 95 / 4e-24 AT3G02430 195 / 1e-62 Protein of unknown function (DUF679) (.1) Potri.008G087000 [exp] 87 / 2e-21 AT1G09157 254 / 1e-85 Protein of unknown function (DUF679) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041247 [exp] 201 / 4e-66 AT3G21550 241 / 8e-82 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) Lus10021955 [exp] 201 / 5e-66 AT3G21550 237 / 3e-80 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) Lus10013975 [exp] 125 / 7e-36 AT4G18425 257 / 3e-87 Protein of unknown function (DUF679) (.1) Lus10015394 [exp] 122 / 9e-35 AT4G18425 273 / 1e-93 Protein of unknown function (DUF679) (.1) Lus10013969 [exp] 121 / 3e-34 AT4G18425 274 / 5e-94 Protein of unknown function (DUF679) (.1) Lus10013971 [exp] 121 / 3e-34 AT5G46090 234 / 2e-78 Protein of unknown function (DUF679) (.1) Lus10015396 [exp] 120 / 4e-34 AT5G46090 239 / 3e-80 Protein of unknown function (DUF679) (.1) Lus10013974 [exp] 117 / 1e-32 AT4G18425 238 / 1e-79 Protein of unknown function (DUF679) (.1) Lus10015395 [exp] 113 / 1e-31 AT4G18425 218 / 3e-72 Protein of unknown function (DUF679) (.1) Lus10018635 [exp] 113 / 4e-31 AT5G46090 192 / 8e-62 Protein of unknown function (DUF679) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05078 [poplar] [flax] DUF679 Protein of unknown function (DUF679)
Representative CDS sequence Show only first row Show all	>Potri.010G027600.1 pacid=42797178 polypeptide=Potri.010G027600.1.p locus=Potri.010G027600 ID=Potri.010G027600.1.v4.1 annot-version=v4.1 ATGGCCACTAAAACCAAGGCAAGCTCCATCCAGGACAAGACATTTTCAGGAGTTGGAAACCTCATAAAGCTCCTCCCAACAGGAACAGTTTTTATGTTCC AATTCCTTAACCCTGTCTTGACCAACAACGGCCAATGCCACACCGTTAACAAGTACCTGAGTGGCATTCTCATGGGCCTCTGTGGCTTCTCTTGCTGTTT CTCTTGTTTCACCGACAGTTACAGGGGCAGTGATGGCTGGACTCACTATGGAATTGCAACCATGAAAGGGCTTTGGCCATCTTCAGATTCTGCTGGGTCG TCCGTGGACTTGTCAAGTTACAAGCTTCGAGTTGGTGACTTCGCTCATGCTTTCTTTTCCTTGATCGTGTTTTCTGTGTTGTCCCTGTTGGATAGCAACA CAGTCAAATGCTTTTATCCTTCTTTCGAGTCCACTGAGAAGGTGTTGCTCATGGTGTTGCCTCCTGCCATTGGTGCAGTTTCGGGTACCGTGTTCATGCT GTTCCCTAACAAGCGCCATGGAATTGGATACCCTTCAAGTGATTCTTCACAGGATTCTTAG
AA sequence Show only first row Show all	>Potri.010G027600.1 pacid=42797178 polypeptide=Potri.010G027600.1.p locus=Potri.010G027600 ID=Potri.010G027600.1.v4.1 annot-version=v4.1 MATKTKASSIQDKTFSGVGNLIKLLPTGTVFMFQFLNPVLTNNGQCHTVNKYLSGILMGLCGFSCCFSCFTDSYRGSDGWTHYGIATMKGLWPSSDSAGS SVDLSSYKLRVGDFAHAFFSLIVFSVLSLLDSNTVKCFYPSFESTEKVLLMVLPPAIGAVSGTVFMLFPNKRHGIGYPSSDSSQDS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21550		AtDMP2	Arabidopsis thaliana DUF679 do...		Potri.010G027600 [exp]	0	1
AT2G14095			unknown protein		Potri.001G310100 [exp]	1.00	0.8972
AT5G48540			receptor-like protein kinase-r...		Potri.002G249600 [exp]	2.44	0.8464
AT3G45010		SCPL48	serine carboxypeptidase-like 4...		Potri.004G215400 [exp]	2.82	0.8454
AT3G22470			Pentatricopeptide repeat (PPR)...		Potri.016G025600 [exp]	3.16	0.8416
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Potri.010G223900 [exp]	5.09	0.7984
AT4G22680	MYB	ATMYB85	myb domain protein 85 (.1)		Potri.012G127700 [exp]	5.29	0.8332
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Potri.003G183900 [exp]	5.83	0.8487
AT3G29200		ATCM1, CM1	ARABIDOPSIS THALIANA CHORISMAT...		Potri.017G088700 [exp]	6.00	0.8030
AT2G45420	AS2	LBD18, ASL20	LOB domain-containing protein ...		Potri.002G149000 [exp]	7.48	0.8327
AT2G16980			Major facilitator superfamily ...		Potri.002G016200 [exp]	7.74	0.8353

Compare expression of checked genes

Potri.010G027600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.