Plant FIBer expression Database

Potri.010G027800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G15530 1582 / 0 PPDK pyruvate orthophosphate dikinase (.1.2.3.4.5.6)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012770
[exp]
1625 / 0 AT4G15530 1541 / 0.0 pyruvate orthophosphate dikinase (.1.2.3.4.5.6)
Lus10034005
[exp]
1587 / 0 AT4G15530 1504 / 0.0 pyruvate orthophosphate dikinase (.1.2.3.4.5.6)
Lus10006147
[exp]
174 / 9e-51 AT4G15530 168 / 1e-49 pyruvate orthophosphate dikinase (.1.2.3.4.5.6)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0364 Leu-IlvD PF00391 PEP-utilizers PEP-utilising enzyme, mobile domain
CL0179 ATP-grasp PF01326 PPDK_N Pyruvate phosphate dikinase, AMP/ATP-binding domain
CL0151 PK_TIM PF02896 PEP-utilizers_C PEP-utilising enzyme, PEP-binding domain
Representative CDS sequence
>Potri.010G027800.5 pacid=42798785 polypeptide=Potri.010G027800.5.p locus=Potri.010G027800 ID=Potri.010G027800.5.v4.1 annot-version=v4.1
ATGTCGTCAACGATAAAAGATATGCTCATTAGGACTAGTGCACCAGCAAGGTTATACAGCAGCAGGCGGAGGCTGTACAAGGCGAAGTATGTGGAAATGA
ATGATTTGCTCCTAAGAGAAGACCGTTCAATGATACGGTTGAGCCGGGGTGGCCGAGCTTATGGGATCCGCACCTGTCAGGATAGCCACAACAATGATGG
GTTCAGTAACATTTCCAGGCCACCTTTGCAGAACAGAACCCGAGCACAAACTATCAGTAGCAGTATCCCAGCTGTGTCAGACCCAACACCCATCGCTACA
AAGCGAGTATTTACTTTTGGAAAAGGAAGGAGCGAAGGCAACAAGACCATGAAGTCCCTGCTGGGAGGGAAGGGAGCAAACCTGGCAGAGATGGCAAGCA
TTGGTTTGTCAGTGCCACCTGGACTCACCATATCAACAGAAGCGTGCCATGAATATCAGCAGATAGGAAACAAGCTGCCACTAGGTTTATGGGAGGAGAT
ATTGGAAGGCTTAAAATTTGTGGAGAAGGACATGGGAGCCGTCCTTGGTGACCCCTCCAAACCTCTCCTCCTCTCTGTTCGTTCTGGCGCTGCTATTTCA
ATGCCTGGCATGATGGACACTGTCCTTAACCTTGGACTGAATGATCAAGTGGTTGCTGGTTTGAGTGCGAAAAGTGGAGAGCGTTTTGCCTATGACTCCT
TCAGGCGCTTTCTAGACATGTTTGGAGATGTTGTGATGGGAATCCCACACTCATCATTTGAGGAGAAGTTAGAAAAGATGAAGGAATCAAAAGGAGTAAT
GCTTGATACTGATCTAACAGCTGCTGATCTCAAAGAACTTGTGGAGCAGTACAAGAAAGTCTATCTTGAAGTGAAGGGTGAAGAGTTTCCATCAGATCCA
AAAAAACAACTGCAGTTAGCTATGACCGCAGTTTTTGATTCTTGGGACAGCCCAAGAGCCATCAAGTACCGAAGCATCAATCAAATTACTGGATTAAAAG
GAACTGCAGTAAACATCCAATGCATGGTTTTTGGGAACATGGGAAATACATCAGGAACAGGTGTTCTGTTTACTAGAAACCCAAGCACTGGTGAAAAGAA
GCTCTACGGGGAATTTCTAATCAATGCTCAGGGAGAGGATGTAGTTGCTGGAATTAGAACACCCGAAGACTTGGATACAATGAAAAATTGCATGCCTCAA
GCTTACGATGAGCTTGTGGAGAATTGTGAAATTCTAGAGCGCCATTACAAAGATATGATGGATATTGAGTTCACAGTTCAAGAAAACAGGCTTTGGATGT
TACAATGCCGATCCGGGAAGCGTACTGGTAAAGGTGCAGTGAAGATAGCTGTAGACATGGTTAGCGAAGGGCTTGTTGATATTCGCTCTGCAATTAAGAT
GGTGGAGCCACAGCATCTCGACCAACTTCTTCACCCACAATTTGAGAATCCATCTGCTTACAAAGACAAAGTGGTCGCGACAGGCTTGCCTGCATCACCA
GGGGCAGCAGTGGGGCAGGTAGTGTTCAGTGCAGATGATGCTGAAGAATGGCATGCGCAGGGAAAAAGTGTCATTTTGGTAAGGACAGAAACCAGCCCAG
AGGATGTTGGTGGCATGCATGCAGCTGCTGGAATCTTGACAGCCAGAGGTGGAATGACATCTCATGCTGCTGTGGTAGCACGTGGTTGGGGAAGATGTTG
TGTGTCTGGCTGCTCTGATATACGTGTCAATGATGCCGAGAAGGTCGTTGTAATTGAGGATGTTGTTATCAGTGAAGGAGAATGGATCTCACTCAATGGA
TCGACTGGTGAAGTAGTACTAGGGAAACAGCCACTATCTCCTCCAGCTCTAAGTGGTGATCTAGAGACATTTATGTCTTGGGCTGACGAAATAAGACGCA
TCAAGGTCATGGCAAACGCTGATACTCCTGAAGATGCACTAAGAGCAAGAAACAATGGTGCCCAAGGGATTGGACTTTGTAGGACAGAGCATATGTTCTT
TGCGTCCGATGAGAGATTAAAGGCTGTGAGAAGGATGATAATGGCAGTTACCACAGAGCAGAGGAAGGCAGCACTAGACCTATTACTACCTTATCAAAGA
TCAGACTTTGAGGGGATTTTTCGTGCAATGGATGGCTTTCCGGTAACAATCCGTCTATTGGATCCTCCACTCCATGAATTTCTGCCAGAAGGTGATCTGG
AACAAATTGTAAGTGAGCTGACCACAGAGACTGGCATGATGGAAGATGAAGTGCTCTCAAGAATCGAGAAATTATCAGAAGTAAATCCTATGCTTGGTTT
CCGAGGCTGCAGGCTAGGGATATCATACCCAGAACTCACTGAAATGCAAGCACGTGCTATCTTTCAGGCTGCCGTCTCAATGAGCAACCAGGGTGTCACC
GTTCTTCCTGAAATAATGGTTCCTCTTGTTGGAACGCCGCAGGAATTAGGGCATCAAATGACTCTAATAAGGAATGTAGCGAAGAAAGTATTCTCTGAAA
TGGATGTAACCTTAAGCTATAAGGTGGGGACCATGATTGAGATTCCTAGAGCTGCTTTGGTTGCAGACGAGATTGCAAAACAAGCGGAGTTCTTCTCCTT
CGGAACCAATGATCTCACGCAAATGACATTTGGATATAGTAGAGATGATGTTGGCAAGTTTCTCCCCATATACCTATCAAAGGGCATTTTGCAAAGCGAT
CCCTTTGAGGTGCTTGATCAGAAAGGTGTAGGCCAACTCATCAAGATTGCCACCGAAAGGGGCCGTGCAGCTAGGCCAAGCTTGAAGGTTGGAATATGTG
GAGAGCATGGAGGGGAGCCTTCTTCTGTGGCATTCTTCGCGGAGGCAGGACTAGACTATGTTTCATGCTCTCCATTCAGGGTCCCCATTGCAAGGCTAGC
AGCTGCACAGGTTGCAGTGTGA
AA sequence
>Potri.010G027800.5 pacid=42798785 polypeptide=Potri.010G027800.5.p locus=Potri.010G027800 ID=Potri.010G027800.5.v4.1 annot-version=v4.1
MSSTIKDMLIRTSAPARLYSSRRRLYKAKYVEMNDLLLREDRSMIRLSRGGRAYGIRTCQDSHNNDGFSNISRPPLQNRTRAQTISSSIPAVSDPTPIAT
KRVFTFGKGRSEGNKTMKSLLGGKGANLAEMASIGLSVPPGLTISTEACHEYQQIGNKLPLGLWEEILEGLKFVEKDMGAVLGDPSKPLLLSVRSGAAIS
MPGMMDTVLNLGLNDQVVAGLSAKSGERFAYDSFRRFLDMFGDVVMGIPHSSFEEKLEKMKESKGVMLDTDLTAADLKELVEQYKKVYLEVKGEEFPSDP
KKQLQLAMTAVFDSWDSPRAIKYRSINQITGLKGTAVNIQCMVFGNMGNTSGTGVLFTRNPSTGEKKLYGEFLINAQGEDVVAGIRTPEDLDTMKNCMPQ
AYDELVENCEILERHYKDMMDIEFTVQENRLWMLQCRSGKRTGKGAVKIAVDMVSEGLVDIRSAIKMVEPQHLDQLLHPQFENPSAYKDKVVATGLPASP
GAAVGQVVFSADDAEEWHAQGKSVILVRTETSPEDVGGMHAAAGILTARGGMTSHAAVVARGWGRCCVSGCSDIRVNDAEKVVVIEDVVISEGEWISLNG
STGEVVLGKQPLSPPALSGDLETFMSWADEIRRIKVMANADTPEDALRARNNGAQGIGLCRTEHMFFASDERLKAVRRMIMAVTTEQRKAALDLLLPYQR
SDFEGIFRAMDGFPVTIRLLDPPLHEFLPEGDLEQIVSELTTETGMMEDEVLSRIEKLSEVNPMLGFRGCRLGISYPELTEMQARAIFQAAVSMSNQGVT
VLPEIMVPLVGTPQELGHQMTLIRNVAKKVFSEMDVTLSYKVGTMIEIPRAALVADEIAKQAEFFSFGTNDLTQMTFGYSRDDVGKFLPIYLSKGILQSD
PFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSPFRVPIARLAAAQVAV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G15530 PPDK pyruvate orthophosphate dikina... Potri.010G027800
[exp]
0 1
AT3G57520 RS2, ATSIP2 raffinose synthase 2, seed imb... Potri.016G002300
[exp]
1.41 0.9823
AT5G22800 EMB86, EMB263, ... EMBRYO DEFECTIVE 86, EMBRYO DE... Potri.009G141300
[exp]
1.41 0.9827
AT1G76570 Chlorophyll A-B binding family... Potri.005G258600
[exp]
3.46 0.9744
AT1G54350 ABCD2 ATP-binding cassette D2, ABC t... Potri.010G176400
[exp]
4.00 0.9712
AT1G73060 LPA3 Low PSII Accumulation 3 (.1) Potri.001G044000
[exp]
4.24 0.9749
AT1G17220 FUG1 fu-gaeri1, Translation initiat... Potri.001G436300
[exp]
4.58 0.9716
AT5G04140 GLS1, GLUS, GLU... FERREDOXIN-DEPENDENT GLUTAMATE... Potri.016G036900
[exp]
4.69 0.9667 Pt-GLU1.1
AT1G53230 TCP TCP3 TEOSINTE BRANCHED 1, cycloidea... Potri.001G375800
[exp]
6.00 0.9655
AT2G04842 EMB2761 EMBRYO DEFECTIVE 2761, threony... Potri.014G162200
[exp]
6.70 0.9735
AT1G17220 FUG1 fu-gaeri1, Translation initiat... Potri.011G140100
[exp]
9.00 0.9704

Potri.010G027800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.