Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03000 452 / 2e-146 RING/U-box superfamily protein (.1.2) AT1G03365 416 / 2e-132 RING/U-box superfamily protein (.1) AT2G35330 245 / 8e-70 RING/U-box superfamily protein (.1.2) AT1G32530 185 / 7e-49 RING/U-box superfamily protein (.1) AT1G73950 51 / 3e-06 Transmembrane Fragile-X-F-associated protein (.1) AT1G68820 49 / 1e-05 Transmembrane Fragile-X-F-associated protein (.1) AT5G03200 47 / 5e-05 RING/U-box superfamily protein (.1) AT3G53410 46 / 6e-05 RING/U-box superfamily protein (.1) AT1G63900 46 / 9e-05 DAL1 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) AT3G09770 46 / 0.0001 LOG2 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G198300 [exp] 1470 / 0 AT4G03000 338 / 8e-103 RING/U-box superfamily protein (.1.2) Potri.003G090000 [exp] 270 / 2e-78 AT2G35330 726 / 0.0 RING/U-box superfamily protein (.1.2) Potri.001G144200 [exp] 254 / 6e-73 AT2G35330 780 / 0.0 RING/U-box superfamily protein (.1.2) Potri.008G116400 [exp] 53 / 6e-07 AT1G68820 667 / 0.0 Transmembrane Fragile-X-F-associated protein (.1) Potri.014G138000 [exp] 49 / 1e-05 AT1G63900 548 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Potri.015G050300 [exp] 49 / 1e-05 AT1G18470 748 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Potri.010G030600 [exp] 47 / 3e-05 AT3G06140 344 / 7e-117 RING/U-box superfamily protein (.1) Potri.012G060100 [exp] 47 / 6e-05 AT1G18470 673 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Potri.013G025400 [exp] 46 / 0.0001 AT5G19080 303 / 5e-100 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041245 [exp] 1035 / 0 AT4G03000 465 / 4e-151 RING/U-box superfamily protein (.1.2) Lus10041244 [exp] 1012 / 0 AT4G03000 492 / 3e-161 RING/U-box superfamily protein (.1.2) Lus10041246 [exp] 997 / 0 AT4G03000 491 / 5e-161 RING/U-box superfamily protein (.1.2) Lus10021954 [exp] 983 / 0 AT4G03000 485 / 1e-158 RING/U-box superfamily protein (.1.2) Lus10004557 [exp] 256 / 9e-77 AT2G35330 473 / 2e-162 RING/U-box superfamily protein (.1.2) Lus10000899 [exp] 254 / 4e-76 AT2G35330 463 / 2e-158 RING/U-box superfamily protein (.1.2) Lus10021953 [exp] 255 / 5e-75 AT4G03000 177 / 1e-47 RING/U-box superfamily protein (.1.2) Lus10032471 [exp] 50 / 5e-06 AT1G18470 701 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Lus10042969 [exp] 49 / 2e-05 AT1G18470 698 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Lus10035057 [exp] 48 / 2e-05 AT1G68820 639 / 0.0 Transmembrane Fragile-X-F-associated protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.010G027900.8 pacid=42798236 polypeptide=Potri.010G027900.8.p locus=Potri.010G027900 ID=Potri.010G027900.8.v4.1 annot-version=v4.1 ATGATTAAAATGGCATCAATGGTTGCTAAAGCCAATAGTAGTTGTTCCAGTCAGGTGTCGCCATTGGCGTCAATCCAAGAAAAGGGAACCAGGAATAAGA GGAAGTTCCATGCTGATCCACCTTTGGGTGACTCGAGTAAGATTATGTCCTCGGCTCAGAATGAGTGTCAGGGTTACGAATTCTCTGCTGAGAAATTTGA AGCCACCCTGGGTCATGGGATGTCCAGTGCCTGTGACATGTGTGGTGCAAACCAAGACCATTCTGATGGGCTGAAACTTGACCTTGGATTCTCTAGTGCC TTAGGTTCATCTGAGGTTGGGCCAAGCCAGCCTAGAGGGGGAGTAGAGTCAGAGGAATCCCATGATGCTGATTGGAGTGATCTTACAGAATCTCAGCTAG AAGAACTTGTTTTGAGCAATTTGGATGCAATCTTCAAAAGTGCAATTAAGAAAATTGTTGCTTGTGGTTATACTGAAGAAGAGGCTAGGAAGGCCATTTT GAGGTCTGGTCGTTGTTATGGGTGTAAAGATACTGTCTCAAATATAGTGGATAATACCTTAGCATTTCTTAGGAACTGTCAAGATATTGAACTTTCAAGA GAGCACTGTTTTGAGGATTTACAACAGCTGGGAAAGTATGTATTGGCAGAATTGGTTTGTGTTCTTCGGGAAGTTCGGCCTTTCTTCAGCACTGGAGATG CAATGTGGTGCCTGTTGATTTGTGACATGAATGTTTCCCATGCTTGTGCAATGGATGGTGATCCCTCGAGCAGCTTTGCTGCTGATGGTGCTTCAAATGG GGCCTCATCTGTTTCCACCCAACCTCAATCAAAACCAGAACCCAAATGTTCTGAGCTAAATTTTCCAAATCCTTGTTCTGAATCCAAGGCAAGCACTAAC GAGACAGCAGTTCCCAAAATAACAAAACCTAAGAACTCTGCTGTTCTCAATGGACCAGTCTCAGATAAAGAGGGATCAGATTCTACAGTTGATCCTATCG ATAAATCCTTCAACATTGCGGGATCTTCTCAATCTACTATATTGGAAGAAAAGTTTGTCATTACTAAGAAGGTCCATTCTGGTGGTAATAAGAGAGATTA CATAGTTCGACAGAAGTCACTCCATCAGGAGAAGAGTTATCGGACATATGGGTCTAAAGCTTCAAGAGCAGGGAAACTAAGTGGTTTGGGTGGTTTAATT TTGGACAAGAAATTAAAATCTGTTCCAGACTCTACTTCTGTTAACATAAAGAATGCTTCATTAAGATTAAGCAAGGCAATGGGAGTTGATGTGCCTCAAG ATAACAGGAACCTGAATCTTCCTAGCAGCCCCCCTTCCCAAGCAGCATTTAATTCAGAATCTTCTAGTACAGGCTCTTCTATCCCTAAGACTGATATCTC ATCCACATTAGCCCCAGTAAGTGCCCTGCCAGCTCTACCTGCAGTCAATACCCCGCCTGCATCATCCGCTGCCGATACTGAGCTTTCTCTTTCACTGCCT GCAAAAAGCAACTCAACTTCAATTCGTGCTAGCTGTAGTGCTAAGGCACCTAAATCTAGTTATGCTGGGATATCATATGACAAGTCTCTGACACAGTGGG TCCCCCATGACAAGAAGGATGAGATGATTATAAAGCTTATTCCCAGGGCACAGGAACTACAAAATCAGCTCCAAGAATGGACAGAATGGGCAAATCAAAA GGTTATGCAGGCTGCTCGAAGGCTGGGTAAGGACAAGGCTGAACTTAAGTCTCTAAGGCATGAGAAGGAAGAGGTTGAAAGGCTCAAGAAAGAGAAGCTA GTTCTGGAGGAAAGCACCATGAAGAAACTTACTGAGATGGAAAATGCTTTGTGCAAGGCCAGCGGGAAGGTGGAGAGAGCTAATTCTGCTGTCCGGAGGC TTGAGGTGGAGAATGCTGTGTTGAGGCAAGAAATGGAGACTGCCAAGTTACGTGCAGCTGAGTCTGCTGCAAGCTGTCAGGAAGTATCAAAGAGGGAGAA GAAAACACTAATGAAGTTTCAGTCATGGGAGAAGCAAAAAACTCTGCTTCAGGAAGAGTTTGCGACTGAAAGACGCAAGTTTTTAGAGCTACTACAGGAT CTTGAGCGGGCCAAACAAATACAGGAACAGCATGAGGCTAGATGGCGACAGGAAGAGAAGGAAAAGGAAGAAGTACTCATGCAGGCCAGTGCGACAAGAA AAGAAAGAGAAAACATCGAGGCTTCAGCTAAATCCAAGGAGGACATGATCAAATTGAAAGCGGAAACCAATCTGCAGAAATACAAGGATGATATTCAGAA ACTTGAAAAAGAGATCTCGCAATTGAGACTGAAGACTGACTCTTCAAAAATTGCAGCGCTTCGAAGGGGAATTGATGGAAGCTATGCTAGCAGACTTGCA GATATAAAAAGTAGCCCTGCTCAGAAGGAGTCAAGGACCCCTTGTATCTCAGAAGTGGCCACAGATTTCCATGACTACTTTGAGATGGGAGGTGTGAAAC GAGAAAGGGAATGTGTGATGTGCCTCTCAGAAGAGATGTCCGTAGTTTTTCTACCATGTGCTCATCAGGTGGTTTGCACAACATGCAATGAGCTCCATGA GAAACAAGGGATGAAGGACTGCCCTTCATGTAGGGGTCCCATCCAGCTGCGCATTCCTGTACGCTATGCTCGATCCTAA
AA sequence Show only first row Show all	>Potri.010G027900.8 pacid=42798236 polypeptide=Potri.010G027900.8.p locus=Potri.010G027900 ID=Potri.010G027900.8.v4.1 annot-version=v4.1 MIKMASMVAKANSSCSSQVSPLASIQEKGTRNKRKFHADPPLGDSSKIMSSAQNECQGYEFSAEKFEATLGHGMSSACDMCGANQDHSDGLKLDLGFSSA LGSSEVGPSQPRGGVESEESHDADWSDLTESQLEELVLSNLDAIFKSAIKKIVACGYTEEEARKAILRSGRCYGCKDTVSNIVDNTLAFLRNCQDIELSR EHCFEDLQQLGKYVLAELVCVLREVRPFFSTGDAMWCLLICDMNVSHACAMDGDPSSSFAADGASNGASSVSTQPQSKPEPKCSELNFPNPCSESKASTN ETAVPKITKPKNSAVLNGPVSDKEGSDSTVDPIDKSFNIAGSSQSTILEEKFVITKKVHSGGNKRDYIVRQKSLHQEKSYRTYGSKASRAGKLSGLGGLI LDKKLKSVPDSTSVNIKNASLRLSKAMGVDVPQDNRNLNLPSSPPSQAAFNSESSSTGSSIPKTDISSTLAPVSALPALPAVNTPPASSAADTELSLSLP AKSNSTSIRASCSAKAPKSSYAGISYDKSLTQWVPHDKKDEMIIKLIPRAQELQNQLQEWTEWANQKVMQAARRLGKDKAELKSLRHEKEEVERLKKEKL VLEESTMKKLTEMENALCKASGKVERANSAVRRLEVENAVLRQEMETAKLRAAESAASCQEVSKREKKTLMKFQSWEKQKTLLQEEFATERRKFLELLQD LERAKQIQEQHEARWRQEEKEKEEVLMQASATRKERENIEASAKSKEDMIKLKAETNLQKYKDDIQKLEKEISQLRLKTDSSKIAALRRGIDGSYASRLA DIKSSPAQKESRTPCISEVATDFHDYFEMGGVKRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRGPIQLRIPVRYARS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03000			RING/U-box superfamily protein...		Potri.010G027900 [exp]	0	1
AT2G18760		CHR8	chromatin remodeling 8 (.1)		Potri.005G226500 [exp]	1.73	0.7995
AT5G59900			Pentatricopeptide repeat (PPR)...		Potri.001G236800 [exp]	7.00	0.6987
AT1G21200	Trihelix		sequence-specific DNA binding ...		Potri.003G204700 [exp]	7.14	0.7086
AT1G04300			TRAF-like superfamily protein ...		Potri.008G163300 [exp]	8.83	0.7680
AT3G10390		FLD	FLOWERING LOCUS D, Flavin cont...		Potri.010G227200 [exp]	14.69	0.6895
AT2G47020			Peptide chain release factor 1...		Potri.014G114000 [exp]	23.91	0.7036
AT2G26790			Pentatricopeptide repeat (PPR)...		Potri.004G066600 [exp]	27.74	0.6894
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.004G176000 [exp]	29.56	0.6768
AT5G04460			RING/U-box superfamily protein...		Potri.010G231100 [exp]	33.70	0.6784
AT1G03350			BSD domain-containing protein ...		Potri.015G050700 [exp]	36.00	0.6959

Compare expression of checked genes

Potri.010G027900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.