Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06290 1155 / 0 AtSAC3B yeast Sac3 homolog B, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) AT3G54380 178 / 2e-48 AtSAC3C yeast Sac3 homolog C, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1.2.3) AT2G39340 52 / 4e-06 AtSAC3A yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G035700 [exp] 184 / 4e-50 AT3G54380 457 / 3e-160 yeast Sac3 homolog C, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1.2.3) Potri.008G047700 [exp] 61 / 1e-08 AT2G39340 880 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Potri.010G213700 [exp] 58 / 6e-08 AT2G39340 845 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034008 [exp] 1400 / 0 AT3G06290 1093 / 0.0 yeast Sac3 homolog B, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Lus10012769 [exp] 1330 / 0 AT3G06290 1033 / 0.0 yeast Sac3 homolog B, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Lus10024110 [exp] 171 / 9e-46 AT3G54380 412 / 1e-142 yeast Sac3 homolog C, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1.2.3) Lus10041609 [exp] 153 / 2e-39 AT3G54380 429 / 3e-149 yeast Sac3 homolog C, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1.2.3) Lus10001973 [exp] 58 / 8e-08 AT2G39340 914 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Lus10030305 [exp] 55 / 6e-07 AT2G39340 935 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G028200.1 pacid=42797158 polypeptide=Potri.010G028200.1.p locus=Potri.010G028200 ID=Potri.010G028200.1.v4.1 annot-version=v4.1 ATGTCTTCAGGGTTTGGAAAGAAAGCAGGACCAACCCCATCTTCATTATCCGAATCTCCTTTTGGTCCTCCTCAGCCGCCTTTTCCCCATTTCCCCCCCA GGGGTTCGGAAGCTGTGCGGTCGCCGCCGATAACTTATCAAGACCCTTTTCTTGCTACCACTCCTTACCAATCAACCGGGATCCCCAGGAGGCCGGAAGC TGTTGAAAGATCACGGTCGCCTCCATCCCGTCCGACTACAACCCCTTCTTACCCATCCAGTGAGCCCTCGTTCAATCAGTTTCCTCCTTCTAGATGGGTC AATGAGCAGGGATCCTTGTTTAATGATGCTTCTGCAGTCGCATCATTTGTTGCTTCACGTAATTCTGGAACTATTGTAACTGCTAAAGGTGCTAGATTTC AGGACCTGAAGAGGGCCAGATCACCTCCTCCACATTCTATTGATGAAGGCATTGCGAGAAATCCCACTCAAAATTTCATTCCAAGCCCTTCAGATTTTCA TGCTGGCAGTGGGAATCACTCAGTACCACCAAGAACAAGATCACCTCCTTTGACTTTTGAAAGCAATAAAACAGCTAAGCATGCTAGTCGTCCTTTTGGC GAAGGCCAACAGCCTACTTTGCCTCCATCTGCATGGGATGATCAGCCCAAGTTGCCAGGAAATTACCCTGACTTGCTGGCGCACCAAGACCCATCAGTCC TATCTTATGCAGGCTCTCACGATTCTATCCATGCCTCAAAGAGAACTAGGTCACCGCCTGTTTCACCAGCTACTGAAGTTCCACATAATAACAATCTTCC TGTTCAAAAGGAATATAAAAGGACTTCTGTGTCTCCTCCTAGGTTAGGTAGTAGGTCAAATGCTATTTTCAGCACCTCAAATTCTCAAATTCCTCAAAGG AATTTTCCGTCTGTAAATGCTACTGTTGATGCCGCTCCCACCAAGACCACCAGCTTTGCTATGTCAAAAAGAACAAGATCACCACCTTTCTCTTTAAGTG ATAAAGTCTCTATGGAAAACTCATATTCCACCCAAGATGATGCGGAAAGAGAGATACAAGCAAAGGCAAAGCGGTTAGCTCGATTCAAGGCAGAATTAAG TGATGATTTTGAAAATAGCCGAGATGCTGCTGACCAGAAGATTTCTGCAAGTGGACGTGAGCAGGCTGTTGTTGGAAGGCAAAATTTTTATTGTGATCAC TCTATTGAATCAGCAGGGGATTTAAGCAACAGCAATATTTCACCAGAGTTTGATGGGTCCGAAACACCCACCATTATAGTCGGGTTATGTCCGGATATGT GTCCTGAGTCAGAAAGGGCAGAAAGAGAAAGGAAAGGGGATCTTGACCATTATGAGCGCTTGGATGGAGAGAGAAATCAAACCAACAAATTTCTTGCTGT TAAGAAATATAATAGGATGGCAGAGAGGGGAGCAAACTTCATACGTCCCTTGCCAATCCTGCAGAAGACTATTGATTATTTGATCAATTTGCTCGATCAG CCTTACAATGATAACTTTCTTGGCATGTATAACTTCTTATGGGATAGGATGCGAGCAATCCGAATGGACCTCAGGATGCAGCACATTTTTAGCCAAGAGT CTATAACTATGCTGGAGCAAATGATAAGGCTTCATATAATTGCCATGCATGAGTTATGCAAATACAAAACAGGAGAGGGGTCAATTGAGGGATTTGATGC GCACCTTAACATTGAACAGATGAACAAAACTTCAGTTGACCTGTTTCAAATGTATGATGACCACCGGAAGAAAGGGATTAATGTGCCAACAGAGAAAGAA TTTCGTGGTTATTATGCACTTCTCAAACTAGATAAGCATCCTGGATATAAAGTTGAACCTGCAGAACTCTCACTGGATCTTGCGAAGATGACACCAGAGA TAAGGCAAACCCCAGAAGTGCTTTTTGCTCGTAATGTAGCAAGGGCTTGTAGAACAGGTAACTTTATTGCCTTTTTTCGGCTTGCAAGGAAAGCAAGTTA CCTTCAAGCATGCTTAATGCATGCTCACTTTGCAAAGTTACGAACCCAGGCACTTGCTTCTTTGCATTCTGGTCTACAAAATAACCAAGGTCTCCCTGTT GGCCTTATTGCCAAGTGGCTTGCAACGGAGGAAGTAGAAAAACTACTGGAGTATCATGGCTTTGCCATAAGGGAATTTGAAGAACCATATATGGTGAAGG ATGGCCTGTTTCTCAATGCTGACAAGGATTACCCTATCAAGTGCTCAAACCTTGTTCATATGAAAAAATCAAAAAGGATTGTTGATGATGTTTCACCACC TTCTCAGAGGGTACCATTGCCTGCTGAAGCAGCTAAAGAGATACAGCCTCTTATGATCTACAAGCATGAAACAAAGGCTGTTCCTTCTGCTTTTGTGGAT GCAAAGAGTTTTGCCAGTGAAATTGATGAAGAAATTCCTGACTTTGAAGTTGTTGCATCCCCAAGTATTGTAGCACAGGTTGAGCCAATGATCGAAGAGC CTATAGTTAACCAAACGAGTCAAGATGATCATCAGGTAGCCAGTGCCTATATCTTTCCATGGGGTGAATCCTGGGCTCATAGCTCCCCTGAAGCTCTGCC AGCTAAGCTTGGAGTTGTGGAGAAGCCAAACCACGATACTCTTTTCAGAGTCCCTCCTAAGAGAAAGATGCCTTCTAGCATGGAAGAAATGTCGTTACCA ATTATGTCAAGAACAGGTTTGCTAGAGAGATCCCCGAGTGATAAATATGGTTATAACTGGGAGAACTCAACTTCCCAGATTGTGGCTATTAATGAATCAA GAGATGAAGAACCTTTTGATATAAATCAAGCAAGTGAAAATGATGAGGTTATGGAAAGTAATGAAGATGAAGAAATTGCTCAGGCAAAACTCAAGTTGAT TATAAGGTTATGGAGGCGGCGATCTTTAAAGCGAAGGGAGTTGCGTGAGCAAAGGCAAATGGCAGCAAATGCTGCACTAAGTTCATTGTCATTGGGACCA CCAATTCGACAGGCCAGAGATCAATCTATCACTGCTACCGTATTTGACATCAATCATGTCATGAAGGAGAGGTACGAAAAACATGAACAATCATGGTCAA GGCTGAATGTTTCAGATGAGATCGCAGATGTTCTTATCAGAAGAAACCCAGATGCCAAATGTCTCTGCTGGAAAATTATTTTATGTTCTCAGATCAACAA CCAAGGAGACAGACTTGGGCAGAGAAGCCAGGTTATGCAAGGGGCAGCTGACTCATGGGTGTTTTCAAAGCTCATGCCTTCTGTAAAAGATAATGATGAT GGTGATCTGCTTATTTCATCTCCTGGCCTGGCAATATGGAGAAAATGGCTTCCAAGTCAATCTGGTAATCACGTAAACTGCTGCTTGTCAGTTGTTAAGG ATTTTAAATTTGACAATTTGAATGAGAAAGTAGATGGAGCAAGTGCGGTTATCTTCCTTGTATCTGAAAGCATCCCATGGAATATTCAAAAAATCCAACT TCGTAAACTTCTAGCATACATCCCTTCCGGTTCCAAATTGCCCCTTCTTGTCTTAAGTGGTTCAAATTATGAAGAGGATTTGGATCTTTCTTCTATTATA GTCAATGAACTGGGCCTTCTGGACATTGACAAATCACAGATTAGTAGTTTTTCAATTGTTTTCCTTATTGAAGACAAACAAGTGGAAATGTGGGATGGAT TTTTCAGTGACATGCGATTAAGGGAAGGACTACGGTGGTTGGCAAATGAATCACCACGACAACCTGATGTTCACTGTGTAAAAACACGGGATTTGGTTCT AACCCATTTAAATCCTTTGTTGGATGTCCTTGAAAACATGAGGGATAATGAGGTAAGTCCAAACCATTGTATCTCAGCCTTCAATGAAGCCTTGGATTGG TCTCTGGGAGAAATTGCTGCTGCTGCCAAATCAAATCCTACCAATTGGCCTTGTCCTGAGATTGCCTTGCTGGAGAATTGCTGCGATGAGCTAATGTTGA TGAACTGGTACTTGCCAAGCATAGGTTGGAGCTTGGCAGAAAGAATTGAACCCTTTTTAAGTGCAACAAGGGACTGTAAACTTCCTAATTTTCCCGATAC CATACCCTGGTCGAATAAAGGTGCAAATACGTTCAATGAGATTGAAGACCTGAGATCTCAACTTGAGAATTGCTTTGTGACATACCTGACTGAATTAAGT GGGATGATGGGTGTTCTTTTAGCTGCAAAAGAGGCATATGTAATGCTACAAAGAAGTGCTCGACTTGAGCTCCATGACTCAAGCTACTATATAGTTCCCA AGTGGATTATGATTTTTAGACGGATTTTTAATTGGCGATTAACGAGTTTATCCAGGGGAGCTTTCTCGTCAGCCTTCATTTTAAGGTGTCATGATGTTGA TACAGCTTCAAGAATTCCCTATGAGCTGCAGCTTGAAGGAGGGGGATCTTCACCTTATCTAATTGAACCTACCCTTGATGAAGTAATTGATGCTGGCTGC AGCCTCTTTATGTCAGGAAGGTATCAAGGACACGCAGAAACTTTTCAGCCTCTACCAAGGACAATTTCAAATGGTGATGTTTGTAAGGACACTAACACGA GTGACTTGGTGGATAGCCAAAGAATTTCAGCACAAAATGGCAATTTGTTTGGGACAGAGAACATTGATCCTGTAAGTAATCAATTAAACACTACTGGTAG TACTGAGGTTGTGTTTTCCAGGAAAGTAACCAAAGAAGCTGACAAATTAAGCAAGTTGTTGGAGCAGTGTAACGTAGTGCAAAACTCAATAGGTGAGAAG CTTTCCGTTTATTTCTGA
AA sequence Show only first row Show all	>Potri.010G028200.1 pacid=42797158 polypeptide=Potri.010G028200.1.p locus=Potri.010G028200 ID=Potri.010G028200.1.v4.1 annot-version=v4.1 MSSGFGKKAGPTPSSLSESPFGPPQPPFPHFPPRGSEAVRSPPITYQDPFLATTPYQSTGIPRRPEAVERSRSPPSRPTTTPSYPSSEPSFNQFPPSRWV NEQGSLFNDASAVASFVASRNSGTIVTAKGARFQDLKRARSPPPHSIDEGIARNPTQNFIPSPSDFHAGSGNHSVPPRTRSPPLTFESNKTAKHASRPFG EGQQPTLPPSAWDDQPKLPGNYPDLLAHQDPSVLSYAGSHDSIHASKRTRSPPVSPATEVPHNNNLPVQKEYKRTSVSPPRLGSRSNAIFSTSNSQIPQR NFPSVNATVDAAPTKTTSFAMSKRTRSPPFSLSDKVSMENSYSTQDDAEREIQAKAKRLARFKAELSDDFENSRDAADQKISASGREQAVVGRQNFYCDH SIESAGDLSNSNISPEFDGSETPTIIVGLCPDMCPESERAERERKGDLDHYERLDGERNQTNKFLAVKKYNRMAERGANFIRPLPILQKTIDYLINLLDQ PYNDNFLGMYNFLWDRMRAIRMDLRMQHIFSQESITMLEQMIRLHIIAMHELCKYKTGEGSIEGFDAHLNIEQMNKTSVDLFQMYDDHRKKGINVPTEKE FRGYYALLKLDKHPGYKVEPAELSLDLAKMTPEIRQTPEVLFARNVARACRTGNFIAFFRLARKASYLQACLMHAHFAKLRTQALASLHSGLQNNQGLPV GLIAKWLATEEVEKLLEYHGFAIREFEEPYMVKDGLFLNADKDYPIKCSNLVHMKKSKRIVDDVSPPSQRVPLPAEAAKEIQPLMIYKHETKAVPSAFVD AKSFASEIDEEIPDFEVVASPSIVAQVEPMIEEPIVNQTSQDDHQVASAYIFPWGESWAHSSPEALPAKLGVVEKPNHDTLFRVPPKRKMPSSMEEMSLP IMSRTGLLERSPSDKYGYNWENSTSQIVAINESRDEEPFDINQASENDEVMESNEDEEIAQAKLKLIIRLWRRRSLKRRELREQRQMAANAALSSLSLGP PIRQARDQSITATVFDINHVMKERYEKHEQSWSRLNVSDEIADVLIRRNPDAKCLCWKIILCSQINNQGDRLGQRSQVMQGAADSWVFSKLMPSVKDNDD GDLLISSPGLAIWRKWLPSQSGNHVNCCLSVVKDFKFDNLNEKVDGASAVIFLVSESIPWNIQKIQLRKLLAYIPSGSKLPLLVLSGSNYEEDLDLSSII VNELGLLDIDKSQISSFSIVFLIEDKQVEMWDGFFSDMRLREGLRWLANESPRQPDVHCVKTRDLVLTHLNPLLDVLENMRDNEVSPNHCISAFNEALDW SLGEIAAAAKSNPTNWPCPEIALLENCCDELMLMNWYLPSIGWSLAERIEPFLSATRDCKLPNFPDTIPWSNKGANTFNEIEDLRSQLENCFVTYLTELS GMMGVLLAAKEAYVMLQRSARLELHDSSYYIVPKWIMIFRRIFNWRLTSLSRGAFSSAFILRCHDVDTASRIPYELQLEGGGSSPYLIEPTLDEVIDAGC SLFMSGRYQGHAETFQPLPRTISNGDVCKDTNTSDLVDSQRISAQNGNLFGTENIDPVSNQLNTTGSTEVVFSRKVTKEADKLSKLLEQCNVVQNSIGEK LSVYF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06290		AtSAC3B	yeast Sac3 homolog B, SAC3/GAN...		Potri.010G028200 [exp]	0	1
AT2G28540			RNA binding (RRM/RBD/RNP motif...		Potri.016G084700 [exp]	3.74	0.7655
AT2G36810			ARM repeat superfamily protein...		Potri.006G120800 [exp]	4.47	0.7690
AT5G05570			transducin family protein / WD...		Potri.010G187700 [exp]	7.48	0.7347
AT1G02080			transcription regulators (.1.2...		Potri.002G143000 [exp]	8.06	0.8032
AT4G17140			pleckstrin homology (PH) domai...		Potri.001G148800 [exp]	11.31	0.7514
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Potri.012G066300 [exp]	12.04	0.7330	ATDGK1.1
AT5G35930			AMP-dependent synthetase and l...		Potri.019G043800 [exp]	12.48	0.7571
AT3G61690			nucleotidyltransferases (.1)		Potri.014G097600 [exp]	15.29	0.7675
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Potri.006G198300 [exp]	15.87	0.7463	Pt-UBP12.2
AT1G04140			Transducin family protein / WD...		Potri.014G193900 [exp]	16.97	0.6908

Compare expression of checked genes

Potri.010G028200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.