Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06270 497 / 1e-176 Protein phosphatase 2C family protein (.1) AT2G20050 392 / 7e-127 protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (.1.2) AT5G27930 107 / 7e-26 Protein phosphatase 2C family protein (.1.2) AT4G03415 107 / 2e-25 Protein phosphatase 2C family protein (.1.2) AT5G26010 105 / 5e-25 Protein phosphatase 2C family protein (.1) AT5G36250 105 / 1e-24 Protein phosphatase 2C family protein (.1) AT3G05640 103 / 2e-24 Protein phosphatase 2C family protein (.1.2) AT1G79630 101 / 2e-23 Protein phosphatase 2C family protein (.1.2.3) AT3G02750 101 / 3e-23 Protein phosphatase 2C family protein (.1.2.3) AT1G03590 100 / 1e-22 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G198700 [exp] 679 / 0 AT3G06270 481 / 1e-170 Protein phosphatase 2C family protein (.1) Potri.018G084900 [exp] 391 / 3e-126 AT2G20050 1461 / 0.0 protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (.1.2) Potri.018G059800 [exp] 103 / 2e-24 AT5G26010 323 / 9e-110 Protein phosphatase 2C family protein (.1) Potri.013G012200 [exp] 102 / 4e-24 AT5G27930 556 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.019G103100 [exp] 103 / 8e-24 AT4G03415 706 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.001G473300 [exp] 101 / 4e-23 AT1G16220 538 / 0.0 Protein phosphatase 2C family protein (.1) Potri.005G021900 [exp] 100 / 4e-23 AT5G27930 571 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.004G066200 [exp] 100 / 6e-23 AT1G16220 526 / 0.0 Protein phosphatase 2C family protein (.1) Potri.013G144100 [exp] 100 / 8e-23 AT4G03415 696 / 0.0 Protein phosphatase 2C family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034009 [exp] 516 / 0 AT3G06270 506 / 5e-180 Protein phosphatase 2C family protein (.1) Lus10041242 [exp] 516 / 0 AT3G06270 508 / 1e-180 Protein phosphatase 2C family protein (.1) Lus10012768 [exp] 511 / 1e-180 AT3G06270 502 / 2e-178 Protein phosphatase 2C family protein (.1) Lus10021952 [exp] 465 / 2e-163 AT3G06270 447 / 2e-157 Protein phosphatase 2C family protein (.1) Lus10034955 [exp] 379 / 1e-121 AT2G20050 1472 / 0.0 protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (.1.2) Lus10012976 [exp] 303 / 1e-94 AT2G20050 1269 / 0.0 protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (.1.2) Lus10041277 [exp] 111 / 7e-26 AT5G21160 563 / 0.0 LA RNA-binding protein (.1.2.3) Lus10022588 [exp] 107 / 2e-25 AT5G36250 421 / 1e-145 Protein phosphatase 2C family protein (.1) Lus10031475 [exp] 102 / 1e-23 AT5G27930 456 / 3e-161 Protein phosphatase 2C family protein (.1.2) Lus10018570 [exp] 101 / 5e-23 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.010G028300.2 pacid=42799743 polypeptide=Potri.010G028300.2.p locus=Potri.010G028300 ID=Potri.010G028300.2.v4.1 annot-version=v4.1 ATGGGTTGTGTTAATGGCAAGTGTTGTAGCAGGTACCCATCGTCAACAGATAGTGATTCAGGGGGATACGGTGAAATGGGTTCATGTAGGAATGCTACCA ACAAGCATATACTTACACAAAGATCACTAGAGATTGTTCCTGTCCCTTCACAAAACTATGAATTGCAGTACTCTGTCTTAACACAGAGAGGTTACTATCC TGACTCGCCAGATAAGGAAAACCAGGATAGTTTTTGCATTAGAACCCAAATTCAAGGTAACCCAAATGTACATTTCTTTGGTGTGTTTGATGGGCATGGT CATTTTGGTACTGAATGTTCCAGGTTTGTTAAGGATAGGTTAGCTGAGATATTAGCAAATGATCCCACGTTGTTGGATGACCCTGTTAAAGCTTATAATT CAGCATTCTTAATGACAAACTATGAGTTACATAGTAGTGAGATTGATGATTCAATGAGTGGTACAACAGCAATAACAGTTCTTGTTATTGGAGATGCAAT TTATGTTGCTAATGTGGGTGATTCGAGAGCAGTGATTGCTGTTAAGAATGGGAATAGGATTGTAGCAGAGAATTTGTCTAGTGATCAAACACCGTTTAGG AAAGACGAGTATGAAAGAGTTAAGCTTTGTGGTGCTAGGGTACTGAGTGTTGATCAAGTGGAAGGACTTAAGGATCCAGATATACAGGCGTGGGGTGATG AGGAAAGTCAAGGGGGTGATCCTCCAAGATTGTGGGTGCAAAACGGGATGTATCCAGGAACAGCATTTACAAGGAGTGTAGGGGATAGTACAGCTGAGAA AATTGGTGTTATTTCTGTTCCAGAGGTGTCTATGGTTCGCCTTACTCCTAATCATTTGTTTTTTGTTGTTGCAAGTGATGGAGTTTTCGAGTTCCTCTCC AGCCAAACTGTTGTAGATATGGTGACAAGATACACAGATTCCCGAGATGCTTGTGCAGCCATTGCTGGGGAGTCATACAAAATATGGTTGGAACATGAAA ACAGGACAGATGATATTACGATCATTATTGTTCACATCAAGGGCTTATCTAATTCAGGTGCTGGTGACACAGATGGAACCACTGGAGGTAATAGGAATCC CACAAGTTCAAGGACAGGAAGAGGATCTTCTGACAGCTCTGCTGCCTCTGGATCCGAAATATACCGTTCAATAAGAAGTGAATTCACAGATCTGCAACTT TCCATGAATCGAAGCCCGGCTATTGTTGTTCCATCTCCATCTCAGCCCTGGGAATTGGATGGGGGTTAG
AA sequence Show only first row Show all	>Potri.010G028300.2 pacid=42799743 polypeptide=Potri.010G028300.2.p locus=Potri.010G028300 ID=Potri.010G028300.2.v4.1 annot-version=v4.1 MGCVNGKCCSRYPSSTDSDSGGYGEMGSCRNATNKHILTQRSLEIVPVPSQNYELQYSVLTQRGYYPDSPDKENQDSFCIRTQIQGNPNVHFFGVFDGHG HFGTECSRFVKDRLAEILANDPTLLDDPVKAYNSAFLMTNYELHSSEIDDSMSGTTAITVLVIGDAIYVANVGDSRAVIAVKNGNRIVAENLSSDQTPFR KDEYERVKLCGARVLSVDQVEGLKDPDIQAWGDEESQGGDPPRLWVQNGMYPGTAFTRSVGDSTAEKIGVISVPEVSMVRLTPNHLFFVVASDGVFEFLS SQTVVDMVTRYTDSRDACAAIAGESYKIWLEHENRTDDITIIIVHIKGLSNSGAGDTDGTTGGNRNPTSSRTGRGSSDSSAASGSEIYRSIRSEFTDLQL SMNRSPAIVVPSPSQPWELDGG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06270			Protein phosphatase 2C family ...		Potri.010G028300 [exp]	0	1
AT3G14010		CID4	CTC-interacting domain 4 (.1.2...		Potri.001G171100 [exp]	1.00	0.9166
AT2G46900			unknown protein		Potri.002G183500 [exp]	2.82	0.8459
AT4G31770		ATDBR1	ARABIDOPSIS THALIANA DEBRANCHI...		Potri.018G015300 [exp]	3.46	0.8686
AT1G21560			unknown protein		Potri.002G077500 [exp]	7.07	0.7982
AT3G25910			Protein of unknown function (D...		Potri.006G154300 [exp]	8.94	0.8057
AT1G36370		SHM7	serine hydroxymethyltransferas...		Potri.001G212000 [exp]	9.48	0.8366	SHMT9
AT3G04470			Ankyrin repeat family protein ...		Potri.013G047500 [exp]	10.72	0.7995
AT1G26110		DCP5	decapping 5 (.1.2)		Potri.017G111500 [exp]	10.81	0.8283
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Potri.002G044000 [exp]	14.89	0.8342
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Potri.006G003800 [exp]	19.07	0.7676	Pt-CCSPK1.2

Compare expression of checked genes

Potri.010G028300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.