Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18930 451 / 7e-160 BUD2, SAMDC4 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1) AT3G02470 265 / 1e-86 SAMDC S-adenosylmethionine decarboxylase (.1.3.4) AT3G25570 254 / 2e-82 Adenosylmethionine decarboxylase family protein (.1.2) AT5G15950 250 / 1e-80 Adenosylmethionine decarboxylase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G198800 [exp] 648 / 0 AT5G18930 461 / 1e-163 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1) Potri.018G101500 [exp] 276 / 1e-90 AT3G02470 358 / 2e-122 S-adenosylmethionine decarboxylase (.1.3.4) Potri.004G106800 [exp] 252 / 2e-81 AT3G02470 478 / 3e-170 S-adenosylmethionine decarboxylase (.1.3.4) Potri.010G133900 [exp] 251 / 4e-81 AT3G25570 478 / 3e-170 Adenosylmethionine decarboxylase family protein (.1.2) Potri.017G108800 [exp] 251 / 6e-81 AT3G02470 481 / 3e-171 S-adenosylmethionine decarboxylase (.1.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021951 [exp] 464 / 8e-165 AT5G18930 361 / 3e-124 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1) Lus10041241 [exp] 461 / 7e-164 AT5G18930 363 / 2e-125 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1) Lus10035083 [exp] 266 / 3e-87 AT3G25570 473 / 2e-168 Adenosylmethionine decarboxylase family protein (.1.2) Lus10031919 [exp] 266 / 7e-87 AT3G25570 470 / 4e-167 Adenosylmethionine decarboxylase family protein (.1.2) Lus10040973 [exp] 265 / 3e-86 AT3G25570 372 / 9e-128 Adenosylmethionine decarboxylase family protein (.1.2) Lus10000156 [exp] 258 / 5e-83 AT3G25570 486 / 3e-172 Adenosylmethionine decarboxylase family protein (.1.2) Lus10019146 [exp] 258 / 1e-82 AT3G25570 478 / 3e-169 Adenosylmethionine decarboxylase family protein (.1.2) Lus10034412 [exp] 253 / 5e-81 AT3G25570 481 / 3e-170 Adenosylmethionine decarboxylase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01536 [poplar] [flax] SAM_decarbox Adenosylmethionine decarboxylase
Representative CDS sequence Show only first row Show all	>Potri.010G028500.1 pacid=42798553 polypeptide=Potri.010G028500.1.p locus=Potri.010G028500 ID=Potri.010G028500.1.v4.1 annot-version=v4.1 ATGGCTATGTCTGGATTTGAAGGGTATGAGAAGAGGTTGGAGCTTCATTTCTTTGGTGATGACCCTGCGATGTTGGACAACAATCTGGGTCTAAGGCTTC TTGATTTTGAGTCATTAGAACAAGTGTTAAATGCCGTGCAATGCACTGTAGTATCTGCTGTGGCTAACCAATATTTTGATGCCTACGTGTTATCAGAATC AAGCCTCTTTGTGTACCCCACCAAGATCATCATCAAGACATGTGGGACCACCCAGCTCCTCAAATCTATCCGTCCATTAATACACTATGCTTGCAATCTT GGCCTATCTTTGTGCTCTTGTAGGTACACAAGAGGTACGTTTATCTTCCCTAAAGCACAACCTTCCCCTCACACCAGCTTCAAAGAAGAAGTTATGTGCC TTGAAGATGCCCTCCCTAACAATCTTTGCTATAGAAAAGCCTCTGTCATGCCTTCTAAAACCACCACTAACTCTTGGCATGTCTTCACTGCTAGTGATGA ATCTCACATAATCCCCAATGATCATGATATTTACACTGTTGAGGTATGCATGACTGATCTTGACCGTGTTTTGGCTCGTAAATTTTTTCTACCTCCTGGT GGGGGCAACAAAAGTGGTGACGTAGCTGGCAAAGAAATGACAAAAATTACTGGCATAGGTGATATCAATCCAAGAGCTATGATTTGTGATTTTGCGTTTG ACCCTTGTGGATACTCCATGAATGGGATTCATAATGATCGCTACTCTACCATTCATGTCACCCCAGAAGATGGCTTTAGCTATGCAAGCTTTGAGTGTGT GGGCTCCATCTTCGATGATGATGATATTGAACATCTTGTCGGGACTTTGAGGAAGGCAGTGCAAGTTTTCCGGCCAGCTACCCTTTCGGTGTCGACTACT TGTGCAAGCCACGAGGTATGGCCACGTGTCACCCATGCTCTCGAGCCACTTGGTTTGAAATGCCGGAGTTGCGCTGCCGATGAGTTTCCAGCCGCCGGAA GCATCGTGTTTCAAACGTACACAGCCCGCCGGAAATAG
AA sequence Show only first row Show all	>Potri.010G028500.1 pacid=42798553 polypeptide=Potri.010G028500.1.p locus=Potri.010G028500 ID=Potri.010G028500.1.v4.1 annot-version=v4.1 MAMSGFEGYEKRLELHFFGDDPAMLDNNLGLRLLDFESLEQVLNAVQCTVVSAVANQYFDAYVLSESSLFVYPTKIIIKTCGTTQLLKSIRPLIHYACNL GLSLCSCRYTRGTFIFPKAQPSPHTSFKEEVMCLEDALPNNLCYRKASVMPSKTTTNSWHVFTASDESHIIPNDHDIYTVEVCMTDLDRVLARKFFLPPG GGNKSGDVAGKEMTKITGIGDINPRAMICDFAFDPCGYSMNGIHNDRYSTIHVTPEDGFSYASFECVGSIFDDDDIEHLVGTLRKAVQVFRPATLSVSTT CASHEVWPRVTHALEPLGLKCRSCAADEFPAAGSIVFQTYTARRK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18930		BUD2, SAMDC4	BUSHY AND DWARF 2, Adenosylmet...		Potri.010G028500 [exp]	0	1
AT2G24960			unknown protein		Potri.004G172900 [exp]	7.34	0.8453
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Potri.008G151800 [exp]	9.48	0.8552
AT2G21050		LAX2	like AUXIN RESISTANT 2 (.1)		Potri.004G172800 [exp]	14.07	0.8371	PtrAUX5
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Potri.010G089200 [exp]	14.14	0.8067
AT5G02420			unknown protein		Potri.001G239000 [exp]	15.74	0.8122
AT2G39870			unknown protein		Potri.008G062200 [exp]	16.97	0.7418
AT5G02420			unknown protein		Potri.009G030200 [exp]	22.13	0.8366
AT1G61667			Protein of unknown function, D...		Potri.011G032600 [exp]	23.04	0.8076
AT2G01210			Leucine-rich repeat protein ki...		Potri.017G119000 [exp]	28.12	0.7311
AT1G54610			Protein kinase superfamily pro...		Potri.008G204400 [exp]	29.69	0.7886

Compare expression of checked genes

Potri.010G028500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.