Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18940 468 / 1e-166 Mo25 family protein (.1.2) AT5G47540 234 / 5e-75 Mo25 family protein (.1) AT4G17270 233 / 4e-74 Mo25 family protein (.1) AT2G03410 203 / 1e-62 Mo25 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G198900 [exp] 526 / 0 AT5G18940 436 / 5e-154 Mo25 family protein (.1.2) Potri.006G014800 [exp] 233 / 2e-74 AT5G47540 569 / 0.0 Mo25 family protein (.1) Potri.014G162100 [exp] 235 / 5e-74 AT5G47540 461 / 1e-162 Mo25 family protein (.1) Potri.010G155400 [exp] 231 / 1e-73 AT5G47540 588 / 0.0 Mo25 family protein (.1) Potri.016G011100 [exp] 231 / 1e-73 AT5G47540 589 / 0.0 Mo25 family protein (.1) Potri.002G222800 [exp] 228 / 4e-72 AT5G47540 458 / 1e-162 Mo25 family protein (.1) Potri.019G057100 [exp] 175 / 1e-51 AT5G47540 411 / 5e-144 Mo25 family protein (.1) Potri.010G155300 [exp] 142 / 2e-40 AT5G47540 348 / 6e-121 Mo25 family protein (.1) Potri.016G011300 [exp] 87 / 1e-20 AT5G47540 262 / 1e-88 Mo25 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034014 [exp] 470 / 2e-167 AT5G18940 522 / 0.0 Mo25 family protein (.1.2) Lus10012762 [exp] 460 / 8e-163 AT5G18940 512 / 0.0 Mo25 family protein (.1.2) Lus10010497 [exp] 237 / 1e-75 AT5G47540 594 / 0.0 Mo25 family protein (.1) Lus10017565 [exp] 236 / 3e-75 AT5G47540 593 / 0.0 Mo25 family protein (.1) Lus10027342 [exp] 234 / 2e-74 AT5G47540 592 / 0.0 Mo25 family protein (.1) Lus10039045 [exp] 206 / 5e-64 AT5G47540 517 / 0.0 Mo25 family protein (.1) Lus10036523 [exp] 203 / 1e-61 AT5G47540 446 / 1e-156 Mo25 family protein (.1) Lus10041405 [exp] 201 / 2e-61 AT5G47540 446 / 3e-157 Mo25 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF08569 [poplar] [flax] Mo25 Mo25-like
Representative CDS sequence Show only first row Show all	>Potri.010G028700.1 pacid=42797336 polypeptide=Potri.010G028700.1.p locus=Potri.010G028700 ID=Potri.010G028700.1.v4.1 annot-version=v4.1 ATGTCGTTTTCATTCTTCAAAGCGTCACGGCCAAAAACACCACAGGAAGTGGTGAAAGCAATGAAAGATAGCCTCGTGGCTCTTGATACCAAAACCGTTG TTGAAGTTAAAGCCCTTGAGAAGGCATTGGAAGAAGTAGAGAAGAATTTTGTGTCAATGAGATGTATGCTGTGTGGAGATGGGGAGGTTGAATCGAATAC GGATCAAGTTTCCCAATTAGCACTTGAAGTTTGCAAAGAGGATGTTCTTGCTCTTATGATTCACAAGTTACCTAATTTGGGATGGGAAGCAAGAAAGGAT TTAGTCCATTGTTGGTCTATATTGTTGAAGCAAAAGGTTGACTCAAGATACTGCTCTGTAGAATACATAGAGAACCATTTTGAATTTCTAGACTTTCTTG TTGTATGCTATGATAACAAGGAAATTGCCTTGAATTGTGGGCTTATGCTAAGGGAATGCATAAAGTTTCCGACGCTTGCAAAATATATATTAGAGTCTGC AAGCTTTGAGTTGTTCTTCAAATTTGTGGAATTGCCTAACTTTGATGTTGCTTCTGATGCTTTCTCCACTTTCAAGGATTTACTGACTAAACATGGCACT GTGGTTGCGGAGTATCTTACTGCACATTATGATGAGTTCTTTGATCAATATGAAAAACTCTTGACATCTTCTAATTATGTGACGAGAAGGCAATCATTGA AGCTTCTCTCGGAATTCCTTTTGGAACCTCCGAGCTCTCATATAATGAAGCGCTACATTCAAGAAGTTCGGTACTTGAAAGTCATGATGACTTTGCTGAA GGACTCGAGCAAAAATATTCAGATCTCTGCTTTCCACATTTTCAAGGTCTTTGTTGCTAATCCTAACAAGCCACGAGAGGTGAAAGTGATTTTGGCCAAA AACCATGGAAAATTGTTGGAATTGCTTCACAATCTCTCAGCTGGAAAAGGTGCTGAGGATGAACAGTTTGAAGAGGAAAAGGAATTGATCATCAAGGAAA TTGATAGACTATCTCGCCTGTCAAATCCAGATCATTAG
AA sequence Show only first row Show all	>Potri.010G028700.1 pacid=42797336 polypeptide=Potri.010G028700.1.p locus=Potri.010G028700 ID=Potri.010G028700.1.v4.1 annot-version=v4.1 MSFSFFKASRPKTPQEVVKAMKDSLVALDTKTVVEVKALEKALEEVEKNFVSMRCMLCGDGEVESNTDQVSQLALEVCKEDVLALMIHKLPNLGWEARKD LVHCWSILLKQKVDSRYCSVEYIENHFEFLDFLVVCYDNKEIALNCGLMLRECIKFPTLAKYILESASFELFFKFVELPNFDVASDAFSTFKDLLTKHGT VVAEYLTAHYDEFFDQYEKLLTSSNYVTRRQSLKLLSEFLLEPPSSHIMKRYIQEVRYLKVMMTLLKDSSKNIQISAFHIFKVFVANPNKPREVKVILAK NHGKLLELLHNLSAGKGAEDEQFEEEKELIIKEIDRLSRLSNPDH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18940			Mo25 family protein (.1.2)		Potri.010G028700 [exp]	0	1
AT3G15050		IQD10	IQ-domain 10 (.1)		Potri.001G375700 [exp]	2.44	0.9105
AT3G18860			transducin family protein / WD...		Potri.004G150700 [exp]	3.87	0.8781
AT2G28320			Pleckstrin homology (PH) and l...		Potri.009G011200 [exp]	4.58	0.9016
AT5G09260		VPS20.2	vacuolar protein sorting-assoc...		Potri.007G101500 [exp]	4.79	0.8638	Pt-ATHDH.3
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Potri.008G068400 [exp]	6.00	0.8997	Pt-PLC1.2
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Potri.012G070500 [exp]	7.74	0.8834
AT1G51200			A20/AN1-like zinc finger famil...		Potri.006G056500 [exp]	9.16	0.8783
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Potri.004G059600 [exp]	9.74	0.8999	CESA.2
AT1G32540		LOL1	lsd one like 1 (.1.2.3)		Potri.003G090300 [exp]	13.41	0.8285
					Potri.008G100650 [exp]	13.41	0.8106

Compare expression of checked genes

Potri.010G028700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.