Plant FIBer expression Database

Potri.010G028801 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G03350 211 / 1e-62 BSD domain-containing protein (.1)
AT4G13110 190 / 2e-56 BSD domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G199100
[exp]
440 / 2e-151 AT4G13110 215 / 8e-66 BSD domain-containing protein (.1)
Potri.008G199000
[exp]
340 / 2e-113 AT4G13110 179 / 4e-53 BSD domain-containing protein (.1)
Potri.015G050700
[exp]
194 / 3e-60 AT1G03350 116 / 1e-31 BSD domain-containing protein (.1)
Potri.017G053801
[exp]
64 / 2e-12 AT1G67320 108 / 6e-29 EMBRYO DEFECTIVE 2813, DNA primase, large subunit family (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012761
[exp]
252 / 9e-79 AT1G03350 241 / 1e-76 BSD domain-containing protein (.1)
Lus10042670
[exp]
190 / 1e-54 AT1G03350 305 / 7e-99 BSD domain-containing protein (.1)
Lus10029636
[exp]
183 / 6e-52 AT1G03350 302 / 1e-97 BSD domain-containing protein (.1)
Lus10034015
[exp]
47 / 2e-05 AT1G03350 54 / 2e-08 BSD domain-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03909 BSD BSD domain
Representative CDS sequence
>Potri.010G028801.1 pacid=42796982 polypeptide=Potri.010G028801.1.p locus=Potri.010G028801 ID=Potri.010G028801.1.v4.1 annot-version=v4.1
ATGAAAGAGAAGTCACCGATCCCTCGTCTTTCTCACTACAAAATCAAAACAATTAATCCTTCCCAAATGAATTTCTTCAAATCAGTCTTCGCTGATGACA
CAACACCACCCGATTCACCCAAATCCCGTTCCCCTCCTAACAATTCCACCTCCGAAGACCCGAACCCGACAACCCAAAACCAGGTCTGGTCTCTTGGTTC
ATTAATCCAGACCTTAGCAACCAAGTCTGAATCCGTTATGGAAATCTACAAAAAGGATCTTGAAGAATTCGGATCCGGCTTAAAAAAAGAAACCGCCATT
ATTCGTGATGTCGCTTCACGCGCTGTCCATGATCTCCCCGCCTCCTTCGAGGCAAGCGCAGCCGTCGCTCAAGAAACCATCGACGGTATTGGATCCACCA
TGTGGAAATCAACGGCCCAGATCATTTCTCAAGGTAAAGACTCCATTTTAGATGCTGACCATGATCATGATTTATTCTCATCTAATGCTGATGGTAGTAG
AAGTAATTTGAGTAAACAGCAGTCTTTGGATGTGAAATACAGTCGTTTTGATGCTCAAGTGCATGCATTGCAGTCTGATTTGGATACTTATTGTAGCGAA
CCAGAGGATAAGGTTGATTATGAGAAATGGAAATTAGGGGGTCTTGTAATGGATGAGAAAAAAGAGGAGATCGAGCGGTTAATTACTGAGAATGGGGTGA
TTAGGGATATTTATAATGAGGTTGTGCCGAACAGAGTTGATGATGAGAGTTTCTGGAGTAGGTATTTTTATAGGATGCTCAAGTTGAAACAAACCGAGGA
GGCGAGGGCTTTGCTTGTTAAACGAGTGATTTCTGGTGATGAAGAGGATTTGAGTTGGGATTTTGATGATGATAAGGAGGAGGGTGATGTGTTTTTGTCG
AAAGGTGAATCAAGTAAAGATGCAAAGGTAGAGAAGGAGAATGTTGATGAGGTGATTAATGAGAATGTAGCAGAGAAGGAAAAGGTTGGGGTTGATAGAA
GTGAGGATAAGTTGGAGGAGAAGGTGGTGGTGGTGGAGGGAAAGGGCAGTACTGCTGAATTGTGCAAGGATAATGATAAGTCGGAGGAGAAGGCTGTGGT
GGTGAAGGGAGAGGGGCATGATGGCATATCATGCAAGGATAGTGATAAGTTGGAGGAGAAGGTGGTGGAGGGAAAGGGGGGTAATGGTGGATCATGTAAG
GATAGTGATGTTTCTGTGGTTTCGAGTCAGTTGCTGCCTGAGGAGGATCTTGAGTGGGATGAGATTGAAGATATTGGGAGTAATGATGAGAGCAAAGGGG
AAGCTGTGGGGAGCGGGAAGAGTGCTGGTACAAGTAAAGTTGACTTGCAGAAGCGGTTGAGCGCTGCAGAGGAAGAGGATGATTTTAGTTGGGATATTGA
AGACGAAGATGATGTGCATGTTAAGTGA
AA sequence
>Potri.010G028801.1 pacid=42796982 polypeptide=Potri.010G028801.1.p locus=Potri.010G028801 ID=Potri.010G028801.1.v4.1 annot-version=v4.1
MKEKSPIPRLSHYKIKTINPSQMNFFKSVFADDTTPPDSPKSRSPPNNSTSEDPNPTTQNQVWSLGSLIQTLATKSESVMEIYKKDLEEFGSGLKKETAI
IRDVASRAVHDLPASFEASAAVAQETIDGIGSTMWKSTAQIISQGKDSILDADHDHDLFSSNADGSRSNLSKQQSLDVKYSRFDAQVHALQSDLDTYCSE
PEDKVDYEKWKLGGLVMDEKKEEIERLITENGVIRDIYNEVVPNRVDDESFWSRYFYRMLKLKQTEEARALLVKRVISGDEEDLSWDFDDDKEEGDVFLS
KGESSKDAKVEKENVDEVINENVAEKEKVGVDRSEDKLEEKVVVVEGKGSTAELCKDNDKSEEKAVVVKGEGHDGISCKDSDKLEEKVVEGKGGNGGSCK
DSDVSVVSSQLLPEEDLEWDEIEDIGSNDESKGEAVGSGKSAGTSKVDLQKRLSAAEEEDDFSWDIEDEDDVHVK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G03350 BSD domain-containing protein ... Potri.010G028801
[exp]
0 1
AT3G05670 RING/U-box protein (.1) Potri.013G011400
[exp]
12.56 0.8747
AT1G05150 Calcium-binding tetratricopept... Potri.002G027900
[exp]
14.00 0.8077
AT5G50380 ATEXO70F1 exocyst subunit exo70 family p... Potri.015G094800
[exp]
17.14 0.8445
AT4G35890 winged-helix DNA-binding trans... Potri.005G109400
[exp]
18.02 0.8009
AT2G22795 unknown protein Potri.007G008600
[exp]
19.69 0.8579
AT5G43490 unknown protein Potri.001G319500
[exp]
21.97 0.8587
AT4G33740 unknown protein Potri.001G288800
[exp]
23.34 0.8487
AT4G36520 Chaperone DnaJ-domain superfam... Potri.005G120700
[exp]
24.12 0.8458
AT3G10400 U11/U12-31K U11/U12-31K, RNA recognition m... Potri.010G227500
[exp]
25.90 0.8295
AT1G03350 BSD domain-containing protein ... Potri.015G050700
[exp]
26.26 0.8007

Potri.010G028801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.