Plant FIBer expression Database

Potri.010G028900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G15470 349 / 1e-122 Bax inhibitor-1 family protein (.1)
AT1G03070 236 / 3e-78 Bax inhibitor-1 family protein (.1.2)
AT4G02690 221 / 2e-72 Bax inhibitor-1 family protein (.1)
AT3G63310 216 / 2e-70 BIL4 BRZ-INSENSITIVE-LONG HYPOCOTYLS 4, Bax inhibitor-1 family protein (.1)
AT4G14730 201 / 9e-65 Bax inhibitor-1 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G199200
[exp]
435 / 1e-156 AT4G15470 348 / 3e-122 Bax inhibitor-1 family protein (.1)
Potri.002G049000
[exp]
239 / 1e-79 AT1G03070 393 / 2e-140 Bax inhibitor-1 family protein (.1.2)
Potri.005G214000
[exp]
227 / 7e-75 AT1G03070 310 / 2e-107 Bax inhibitor-1 family protein (.1.2)
Potri.008G157100
[exp]
222 / 1e-72 AT3G63310 243 / 4e-81 BRZ-INSENSITIVE-LONG HYPOCOTYLS 4, Bax inhibitor-1 family protein (.1)
Potri.005G213900
[exp]
195 / 4e-62 AT3G63310 259 / 9e-88 BRZ-INSENSITIVE-LONG HYPOCOTYLS 4, Bax inhibitor-1 family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041240
[exp]
370 / 6e-131 AT4G15470 369 / 2e-130 Bax inhibitor-1 family protein (.1)
Lus10021950
[exp]
297 / 1e-102 AT4G15470 288 / 8e-99 Bax inhibitor-1 family protein (.1)
Lus10042631
[exp]
226 / 2e-74 AT1G03070 408 / 5e-146 Bax inhibitor-1 family protein (.1.2)
Lus10022085
[exp]
225 / 8e-74 AT1G03070 406 / 3e-145 Bax inhibitor-1 family protein (.1.2)
Lus10004077
[exp]
221 / 4e-72 AT1G03070 404 / 2e-144 Bax inhibitor-1 family protein (.1.2)
Lus10004078
[exp]
58 / 1e-09 AT4G02690 85 / 2e-19 Bax inhibitor-1 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0453 Apoptosis-Inhib PF01027 Bax1-I Inhibitor of apoptosis-promoting Bax1
Representative CDS sequence
>Potri.010G028900.1 pacid=42799230 polypeptide=Potri.010G028900.1.p locus=Potri.010G028900 ID=Potri.010G028900.1.v4.1 annot-version=v4.1
ATGTACGGATACACAAGCGTTAGCAACAAGGATGGGGCAAAGGAGATTGATTTGGAGGCAGGAAATAGAGAGAGTTTGTACCCGGGTTTGAGTCTTGGAG
AGAACCAATTACGATGGGGTTTGATTCGCAAAGTTTATGGAATCTTGGCTGCTCAGCTTGTCCTCACCACCATCGTCTCTGCTGTTACGATTCTCTATAC
TCCTATGACTGATCTCCTCAAGGGAAGTTTCGGGTTCGTTTTGTTTCTATCAATTGTCCCCTTTATTTTGTTGTGGCCCTTGCATGTGTATCACCAGAAA
CACCCTGTGAATCTAATTATTCTTGGCCTCTTCACCGTTTCGCTAAGCCTCTTGGTTGGAGCAAGCTGCGCTAATATAGAAGGTAAAATTGTGCTTGAGG
CATTAATTCTGACCTCCGCTGTGGTTTGCTCTCTAACTGCGTACACTTTCTGGGCTGCAAAGAAGGGCAAGGACTTTAGCTTCCTGGGACCAATTCTGTT
CACTTCCCTCATCATCCTCATCCTGACTAGTTTTATCCAGGTGTTCTTCCCACTTGGCTCGACGTCCACTGCAGTTTATGGTGGAATTAGCGCTTTGATT
TTCTGTGGATACATTGTTTATGACACTGACCACCTGATCAAGCGCTTCTCATATGATGAGTATATTTTGGCCTCTGTTGCTCTCTATTTGGACGTTCTGA
ACCTGTTTCTTTCCATTCTGCGGGTGCTGAGTCAGAGAAACAGTTAG
AA sequence
>Potri.010G028900.1 pacid=42799230 polypeptide=Potri.010G028900.1.p locus=Potri.010G028900 ID=Potri.010G028900.1.v4.1 annot-version=v4.1
MYGYTSVSNKDGAKEIDLEAGNRESLYPGLSLGENQLRWGLIRKVYGILAAQLVLTTIVSAVTILYTPMTDLLKGSFGFVLFLSIVPFILLWPLHVYHQK
HPVNLIILGLFTVSLSLLVGASCANIEGKIVLEALILTSAVVCSLTAYTFWAAKKGKDFSFLGPILFTSLIILILTSFIQVFFPLGSTSTAVYGGISALI
FCGYIVYDTDHLIKRFSYDEYILASVALYLDVLNLFLSILRVLSQRNS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G15470 Bax inhibitor-1 family protein... Potri.010G028900
[exp]
0 1
AT2G35900 unknown protein Potri.016G066800
[exp]
3.31 0.8075
AT1G53540 HSP20-like chaperones superfam... Potri.010G175200
[exp]
3.60 0.8781 Pt-HSP17.8
AT5G13640 PDAT1, ATPDAT PHOSPHOLIPID:DIACYLGLYCEROL AC... Potri.003G063100
[exp]
6.32 0.8182 Pt-ATPDAT.1
AT3G07150 unknown protein Potri.002G244400
[exp]
7.74 0.8686
AT3G52105 unknown protein Potri.001G267501
[exp]
8.12 0.7378
AT2G30000 PHF5-like protein (.1) Potri.009G072300
[exp]
20.61 0.8487
AT4G03320 AtTic20-IV, TIC... translocon at the inner envelo... Potri.019G108800
[exp]
23.62 0.8482
AT4G12040 AtSAP7 stress-associated protein 7, A... Potri.001G115000
[exp]
24.49 0.7420
AT3G22830 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOC... Potri.008G157600
[exp]
27.92 0.8114 Pt-HSFA6.2
AT5G07330 unknown protein Potri.012G111000
[exp]
30.44 0.8137

Potri.010G028900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.