Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14290 679 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT3G23540 661 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G17150 407 / 2e-138 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G200400 [exp] 921 / 0 AT4G14290 672 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G001000 [exp] 429 / 3e-145 AT4G17150 644 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G000700 [exp] 428 / 6e-145 AT4G17150 608 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041237 [exp] 740 / 0 AT4G14290 684 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10021948 [exp] 729 / 0 AT4G14290 674 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10001114 [exp] 725 / 0 AT4G14290 696 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10034017 [exp] 691 / 0 AT4G14290 667 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10039125 [exp] 364 / 2e-119 AT4G17150 551 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10038733 [exp] 300 / 1e-95 AT4G17150 469 / 1e-162 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.010G029200.1 pacid=42798965 polypeptide=Potri.010G029200.1.p locus=Potri.010G029200 ID=Potri.010G029200.1.v4.1 annot-version=v4.1 ATGGAGCAGCTTGTTAACTTTATTATACGGCCTCCCAGAGCTGAATACAATCCAAAACATGATTTGTTGGATCAAGAGTTCATGTTGAAAGGAAAATGGT ACCAAAGAAAGGATGTGGAGGTTCAAAATGGTAGGGGAGATGCTCTTCAATGTAGTCATTACATGCCCATTGTTAATCCCCAAGAAAAGCCTCTGCCATG TGTAATATATTGTCATGGAAACAGTGGTTGCAGGGTTGATGCTAGTGAAGCTGCTGTTATATTGTTGCCTTCAAATATTACAGTTTTCACCCTTGATTTC TCAGGATCCGGACTTTCTGGAGGAGATCATGTCACTCTAGGATGGAATGAAAAAGATGATCTCATGGCTGTCGTTAATTATTTGCGGCAAGATGGAAATG TCTCTTTGATTGGCTTATGGGGCCGTTCAATGGGTGCTGTCACTAGCCTGATGTATGGAGCTGAGGATCCCTCAATCGCTGGAATGGTTCTTGACAGTCC CTTTTCTGATTTGGTTGACCTAATGATGGAACTTGTGGAAACTTACAAATTCCGTTTACCCAAGTTCACTGTGAAATTTGCTATCCAATACATGCGTAAA TCTATTCAGAAAAAGGCAAAGTTTGACATAATGGACCTGAACACCATCAAGGTGGCAAAATCATGTTTTGTTCCTGTTTTATTTGGGCATGCCATTGATG ATGATTTCATACGCCCTCATCACTCACAAAGTATATTTGAAGCTTACATGGGAGACAAGAACATTATCAAGTTTGAGGGAGATCACAACTCTCCACGCCC ACAATTCTATTTTGATTCAATAAATATTTTTTTTCACAATGTTTTACAACCTCCTGAGGATGAGGTGGGGGGAACATACTTTGAAACAATGCATGATTAC TTTGGTAAGGATAGTTGGAGCTCTTTGCATAAAGTTGGCCATAACCCAGAATCTTCAGTTGTGTATAAAGAACCATCATCAAGCAGTACAGCAGATGCCA TTGAACAAGTTCGGTCCAAAACACCTATGAGTCGGATGGAGGTTCCTATGGATATTCAACATAAAGACCATCAATCTGAAGTCGAGCATGAAGAAATTGG TGATGATCATTTGCCATCATCGTCCAAAATGATTAGCTTTGAATTATCCAACGGTCATCCTTATGGCCCACATGTTCCAACAACAATGGATGACAATCAA TATGTGGAATACCAGCTGGAGGACTTGGCAGGTTTTCCATGTGATATAGAGGAGGAAGAAAGGATGTTCATGGAAGCAGTAATTGAGTCATTAAAGGACT TGGAGATGCGACACCCTAATGCAGAGGGACAACCGGCCAGTGTCAGTCCAGCTTCTGTTAAATATTCACAAAAAGATAGCGGGGATGCATCTTCAATTGT AGAACATGGCAATCCTTTGAATACACCAACTTCCACTTCAGTAAAGCAAATGACAGAATCGACATCCTCTTTAGCTGTCAATGACCAAAATTTAGCAACT GAAGGTCCTTCTCCCGCTACAAGTGCAGCATCTGTAGGAACTACATTTGACACTCCGTCATCCATAATGGGGTCAGAAAGCACAACTACCTCTTCTCGAA GTGATACTTCAGGAAGTGTCCACAGCTCAACAGATAGTGACTTGTCAGGTAATACAAAAGCCACATTGACTGTAGAACGGAATCCAGCAGGCCACATTAT GGATGGTTTGCTGCGCCGTTGGGATTTCAACTTGTTCCGAAATGGTAGGTGA
AA sequence Show only first row Show all	>Potri.010G029200.1 pacid=42798965 polypeptide=Potri.010G029200.1.p locus=Potri.010G029200 ID=Potri.010G029200.1.v4.1 annot-version=v4.1 MEQLVNFIIRPPRAEYNPKHDLLDQEFMLKGKWYQRKDVEVQNGRGDALQCSHYMPIVNPQEKPLPCVIYCHGNSGCRVDASEAAVILLPSNITVFTLDF SGSGLSGGDHVTLGWNEKDDLMAVVNYLRQDGNVSLIGLWGRSMGAVTSLMYGAEDPSIAGMVLDSPFSDLVDLMMELVETYKFRLPKFTVKFAIQYMRK SIQKKAKFDIMDLNTIKVAKSCFVPVLFGHAIDDDFIRPHHSQSIFEAYMGDKNIIKFEGDHNSPRPQFYFDSINIFFHNVLQPPEDEVGGTYFETMHDY FGKDSWSSLHKVGHNPESSVVYKEPSSSSTADAIEQVRSKTPMSRMEVPMDIQHKDHQSEVEHEEIGDDHLPSSSKMISFELSNGHPYGPHVPTTMDDNQ YVEYQLEDLAGFPCDIEEEERMFMEAVIESLKDLEMRHPNAEGQPASVSPASVKYSQKDSGDASSIVEHGNPLNTPTSTSVKQMTESTSSLAVNDQNLAT EGPSPATSAASVGTTFDTPSSIMGSESTTTSSRSDTSGSVHSSTDSDLSGNTKATLTVERNPAGHIMDGLLRRWDFNLFRNGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14290			alpha/beta-Hydrolases superfam...		Potri.010G029200 [exp]	0	1
AT2G26600			Glycosyl hydrolase superfamily...		Potri.018G129500 [exp]	8.48	0.7923
AT2G28390			SAND family protein (.1)		Potri.009G014400 [exp]	16.15	0.7110
AT5G06610			Protein of unknown function (D...		Potri.006G196800 [exp]	16.24	0.7940
AT3G05545			RING/U-box superfamily protein...		Potri.005G024700 [exp]	28.42	0.7882
AT4G25230		RIN2	RPM1 interacting protein 2 (.1...		Potri.001G124000 [exp]	30.85	0.7331
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Potri.001G258700 [exp]	34.46	0.7730
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Potri.004G159300 [exp]	41.53	0.7048
AT5G32470			Haem oxygenase-like, multi-hel...		Potri.013G049300 [exp]	50.83	0.7571
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Potri.001G055900 [exp]	50.99	0.7669
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Potri.014G041532 [exp]	52.64	0.6942

Compare expression of checked genes

Potri.010G029200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.