Plant FIBer expression Database

Potri.010G029300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G18980 1040 / 0 ARM repeat superfamily protein (.1)
AT3G06210 1016 / 0 ARM repeat superfamily protein (.1)
AT4G14280 813 / 0 ARM repeat superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G200500
[exp]
1419 / 0 AT5G18980 1009 / 0.0 ARM repeat superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034018
[exp]
1152 / 0 AT5G18980 1065 / 0.0 ARM repeat superfamily protein (.1)
Lus10001111
[exp]
1129 / 0 AT5G18980 1036 / 0.0 ARM repeat superfamily protein (.1)
Lus10042594
[exp]
132 / 1e-36 AT5G18980 117 / 3e-32 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence
>Potri.010G029300.2 pacid=42798501 polypeptide=Potri.010G029300.2.p locus=Potri.010G029300 ID=Potri.010G029300.2.v4.1 annot-version=v4.1
ATGGATCGCGGCGAATCGGAAGAAGATGGCAGCATTCGTTTTCCGGTTGACGAGCTTCGCAGGCTTAGCGAAACCTATGGCTCTGCAACCATTTTTGAGC
CTCAGAGTGATATAGGAAAGAGAGACAGTAGCACTGGAAATTCGGTTTCTCCAACATTACCTGCACCGGAGAAGAAACTCACACTCTTTGCTCTTCGCCT
TGCCATTTTTGAGAAGGCAGCTACTTGCCTCGGAACCCTCGGGTTCATCTGGGCAACAGTTGTTCTTCTCGGAGGGTTTGCGATTACTTTGGATAAAACA
GATTTCTGGTTTATCACCATTATTCTGTTGATTGAAGGGACTCGAATATACAGCAGGAGCCATGAGCTTGAATGGCAACACCAAGCCACCTGGTCAATTA
CTGATGCTGGGATTAACAGTTTCCGGGCATTGAGATCCAGCTCCCACTTCATTATTGAAACTGTGAAAGCACTTTTTAGGCCAATAACACGGGTTCAAAA
GCAGAGTCTGCATACCAGAGAAATAAGGAAGAATCCTGATGCAGAAATCTCTGGGAACTGGGGAGTCCAGAGGAAGCTAACTCGGACATGGACAAGTTCA
GATGTTCCTATTCTACCATATGCTCAATGGTTTTTTCTTTCAAAAAATGTCAGCAAGCTTCTCTATTGGCTCCAGCTTGCATCTGCATCAGCCTGTGTGG
TTTTATCATTGATGAAACTCATCAAACATAACTACGGTGAGGTTGAGAAAGGGAATACTGACAAGAGGAACCGACAATCTGCACTGAATATTTTCTATTC
TTTGGCTTTGGCAGAAGCTCTGTTGTTTCTGATGGAGAGAGCTTACTGGGAGTGGAAGGCAAGCTACTGTAAACTGCTGGAAGAGGTGAGCAGAGAGTGT
GATTTGGGGCTTTCAGGCATAGTTTCGATCAGAAGGTTCTTCTACGATGCCTACTCTAGGTGTCTTGAGGGCAGTATCTTTGATGGCCTAAAAATGAACA
TGGTTACTTTTGCTATGGATCTATTGGCTTCGAATTCCCCTGATGAACAGCTCATTGGAGCTAGAATTCTTCGTCAATTTGTGATGAATCCTCAGTTTTC
TGATGATACTCTCAAAAACATTGGGACAAATATATCAATGATAGACCGATTAGTGGAGGTATTGAACTGGAAAGACCCGCAGGAAGAAGAGATCAGGAGG
TCAGCTGCAGAGATACTATCAAAACTAGCCGGCAAGAAGCAAAACTCCCTACGGGTTGCTGGAATACCTGGCGCATTGAAGTCAATTTCATCTCTGCTAC
AAACCAATAGAAGTTGCAGCACCACAGCTGATGAAATTGGTGAAAAGACAATCATCTGTGATCATGCACATTATGGATTCTGGACATTTAATCATTTAGG
ACTTCTTATCCTGAAGAAGCTCGCTCGTGACCATGATAACTGTGGGAAGATTGGAAATACAAGGGGCCTCCTACCGAAGATCATTGATTTCACACATGTA
GAAGAGAGGTTGCTGAAAGATGAAAATGTAACACCGTCTCAGATTTTAACAGTGAAACGTTCTCTGCAACTGGTGAAGATGCTGGCAAGCACAACAGGCA
CAACAGGTAATAATCTTCGAAGAGAAATCTCAGAGATAGTTTTCACCATCAGCAATATTAGAGATATTCTACGGCATGGCGAAAAACACCCAATGCTACA
AAAACTCAGCATAGAGATATTAACCAGTCTTGCACTAGAAGAGGATGCAAAGGAGAGGATTGGGGGCACGGGTGGAGTTCTTAAGGAGTTATTCAACATT
TTCTTCAGCCAAGGAATTCCTGAAAATCAGAATCACGCAAGAATAGCTGCAGGAGATGCTCTAGCAATGCTGGCCTTGGAAAGCAGAAGGAATTGTCTTC
GCATTTTGAAATTAAAAGTACTGGAAAGGCTAGTTGGAGCACTAGAGGTCCCATTGCTCAGGGTAAATGCTGCAAGAATTCTACGGAACTTGTGCACCTA
TAGCAGAGTAGATTGCTTCGACCAGTTGAAGGGCGTAGCAGCTGCTGTACCCACGGTGCTGGAGGCAGTTATGTCTGAAGAGAACAAACTACAAGAAGTA
ATGGTAGGACTAGCGGCCGAAGCTTTTAAATTCATGACTCCTCAAGAATCCAATATCATGTTTGAAAGAACTGGTATAAAAGAGGCTGAACTAGCCAACA
AAATACTCCAGATTCTCAAAAAGTACGAAAATCCACCAGTCAAGGTTCCAAGAATAAGAAGGTTTTCCATAGAGTTGGCGATTTGGATGATGCGGAACAA
CACGGCGAATGTACGTACTTTCAAGGACCTGGGGTTGGAGAAGGAATTGGAGGGGGTTTTAGAATCCACGGCTGAAGTTGAAAGCTTCAACATATTCTCA
GGCACTTCTGGGCTGAGTCGCCACAGCACAACTATTCACTCACTTGTTGAAACTGCATTGCAGTTGCTGGAAGACAGGTAA
AA sequence
>Potri.010G029300.2 pacid=42798501 polypeptide=Potri.010G029300.2.p locus=Potri.010G029300 ID=Potri.010G029300.2.v4.1 annot-version=v4.1
MDRGESEEDGSIRFPVDELRRLSETYGSATIFEPQSDIGKRDSSTGNSVSPTLPAPEKKLTLFALRLAIFEKAATCLGTLGFIWATVVLLGGFAITLDKT
DFWFITIILLIEGTRIYSRSHELEWQHQATWSITDAGINSFRALRSSSHFIIETVKALFRPITRVQKQSLHTREIRKNPDAEISGNWGVQRKLTRTWTSS
DVPILPYAQWFFLSKNVSKLLYWLQLASASACVVLSLMKLIKHNYGEVEKGNTDKRNRQSALNIFYSLALAEALLFLMERAYWEWKASYCKLLEEVSREC
DLGLSGIVSIRRFFYDAYSRCLEGSIFDGLKMNMVTFAMDLLASNSPDEQLIGARILRQFVMNPQFSDDTLKNIGTNISMIDRLVEVLNWKDPQEEEIRR
SAAEILSKLAGKKQNSLRVAGIPGALKSISSLLQTNRSCSTTADEIGEKTIICDHAHYGFWTFNHLGLLILKKLARDHDNCGKIGNTRGLLPKIIDFTHV
EERLLKDENVTPSQILTVKRSLQLVKMLASTTGTTGNNLRREISEIVFTISNIRDILRHGEKHPMLQKLSIEILTSLALEEDAKERIGGTGGVLKELFNI
FFSQGIPENQNHARIAAGDALAMLALESRRNCLRILKLKVLERLVGALEVPLLRVNAARILRNLCTYSRVDCFDQLKGVAAAVPTVLEAVMSEENKLQEV
MVGLAAEAFKFMTPQESNIMFERTGIKEAELANKILQILKKYENPPVKVPRIRRFSIELAIWMMRNNTANVRTFKDLGLEKELEGVLESTAEVESFNIFS
GTSGLSRHSTTIHSLVETALQLLEDR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G18980 ARM repeat superfamily protein... Potri.010G029300
[exp]
0 1
AT4G00210 AS2 LBD31 LOB domain-containing protein ... Potri.002G148900
[exp]
1.00 0.9659
AT1G08990 PGSIP5 plant glycogenin-like starch i... Potri.005G033500
[exp]
1.41 0.9644
AT1G68470 Exostosin family protein (.1) Potri.001G381900
[exp]
2.44 0.9633
AT1G52330 Late embryogenesis abundant (L... Potri.001G180600
[exp]
2.82 0.9459
AT1G10150 ATPP2-A10 Carbohydrate-binding protein (... Potri.014G006800
[exp]
3.16 0.8958
AT3G53480 PIS1, ABCG37, P... polar auxin transport inhibito... Potri.008G099000
[exp]
4.24 0.8985
AT4G35160 O-methyltransferase family pro... Potri.019G102900
[exp]
4.24 0.9305 COMTL3,Pt-GSI.2
AT1G68470 Exostosin family protein (.1) Potri.001G382200
[exp]
4.47 0.9418
AT1G17430 alpha/beta-Hydrolases superfam... Potri.001G168600
[exp]
4.89 0.9145
AT2G16980 Major facilitator superfamily ... Potri.002G016200
[exp]
5.47 0.8723

Potri.010G029300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.