Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06200 331 / 2e-114 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G41880 78 / 4e-16 AGK1, GK-1 guanylate kinase 1 (.1) AT3G57550 73 / 2e-14 GK-2, AGK2 GUANYLATE KINAS 2, guanylate kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G200600 [exp] 471 / 1e-169 AT3G06200 337 / 8e-117 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G053400 [exp] 79 / 2e-16 AT3G57550 519 / 0.0 GUANYLATE KINAS 2, guanylate kinase (.1.2) Potri.016G054200 [exp] 79 / 3e-16 AT3G57550 493 / 1e-174 GUANYLATE KINAS 2, guanylate kinase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021947 [exp] 340 / 1e-117 AT3G06200 342 / 1e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10041236 [exp] 340 / 1e-117 AT3G06200 341 / 2e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011328 [exp] 74 / 1e-14 AT3G57550 518 / 0.0 GUANYLATE KINAS 2, guanylate kinase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00625 [poplar] [flax] Guanylate_kin Guanylate kinase
Representative CDS sequence Show only first row Show all	>Potri.010G029400.7 pacid=42797885 polypeptide=Potri.010G029400.7.p locus=Potri.010G029400 ID=Potri.010G029400.7.v4.1 annot-version=v4.1 ATGTTTCGCAGACTCTATTTCTCCCTCTCTCGCCCTAACCCAACTCTCTTCTCTCCAATCTCTCACCACGAAAATACCTCTCTTATCATAAATCACAGCA AACCCACTTCTATCTATGAACGTTTCACTTCAACCCCACCAAGATTCTTTGCTTCTTACACCAAAACGAGCGATACCCAGAAGCCTAAATTCACTATTCC ACCTCCTGATAAAGCCTCAAAGCCTGAAATGCTACGTGCCCTTGAGTTCTCAATGGGCTCTTCTTTTAGTACCAACCCAATTTGCCCCCCTCCAAACCCT TTAATCATTGTGATAAGTGGTCCAAGTGGGGTTGGTAAAGATGCTGTTATCAAGAAATTGAGACAAGTTAGAGAAAGTTTGCATTTTGTTGTGACTGCAA CTAGTAGGCCAACGAGAGAAGGTGAGGTTGATGGTAAAGATTATTACTTTGTGTCAGAGGAAGAATTTTTATCAATGGTAGAGAGAAATGAATTGTTAGA GTATGCACTTGTCTATGGTGATTATAAAGGGATACCAAAAAAGCAAATCAGGGAGTTTATGGCAAAAGGGCATGACATAGTTTTAAGAGTTGATGTACAA GGGGCTGAGACTTTGAGGAAGATTTTGGGGAATTCTGCTGTCTTTATATATTTAGTGGCGGAGAGTGAGTTGGAACTTGTGGAGAGGTTGATTGATAGGA AGACTGAGGCTAGCGAGGCTTTGCTTGTGAGGATTGCGACTGCGAGAGAGGAGGTGAAACATGTTAGGGATTTTGATTATGTGGTAGTGAATGGTGAAGG GAAGTTGGATAATGCAGTTAAGCTGGTGGGATCAATCATTGATGCTGAGAAGGCCAAGGTCCAGCAAAGGAGGGCTGTGATTTAG
AA sequence Show only first row Show all	>Potri.010G029400.7 pacid=42797885 polypeptide=Potri.010G029400.7.p locus=Potri.010G029400 ID=Potri.010G029400.7.v4.1 annot-version=v4.1 MFRRLYFSLSRPNPTLFSPISHHENTSLIINHSKPTSIYERFTSTPPRFFASYTKTSDTQKPKFTIPPPDKASKPEMLRALEFSMGSSFSTNPICPPPNP LIIVISGPSGVGKDAVIKKLRQVRESLHFVVTATSRPTREGEVDGKDYYFVSEEEFLSMVERNELLEYALVYGDYKGIPKKQIREFMAKGHDIVLRVDVQ GAETLRKILGNSAVFIYLVAESELELVERLIDRKTEASEALLVRIATAREEVKHVRDFDYVVVNGEGKLDNAVKLVGSIIDAEKAKVQQRRAVI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06200			P-loop containing nucleoside t...		Potri.010G029400 [exp]	0	1
AT3G06200			P-loop containing nucleoside t...		Potri.008G200600 [exp]	1.00	0.9809
AT2G15690			Tetratricopeptide repeat (TPR)...		Potri.003G058300 [exp]	1.41	0.9645
AT1G15710			prephenate dehydrogenase famil...		Potri.001G201100 [exp]	2.44	0.9550
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.015G013800 [exp]	3.60	0.9418
					Potri.017G120301 [exp]	4.24	0.9520
AT2G45680	TCP	TCP9	TCP family transcription facto...		Potri.001G111800 [exp]	4.24	0.9485
AT1G62680			Pentatricopeptide repeat (PPR)...		Potri.016G136700 [exp]	5.65	0.9544
AT2G37400			Tetratricopeptide repeat (TPR)...		Potri.016G080000 [exp]	5.91	0.9532
AT3G53580			diaminopimelate epimerase fami...		Potri.006G102700 [exp]	6.16	0.9243
AT1G31220			Formyl transferase (.1)		Potri.012G107500 [exp]	6.92	0.9358

Compare expression of checked genes

Potri.010G029400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.