Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06190 581 / 0 ATBPM2 BTB-POZ and MATH domain 2 (.1.2) AT5G19000 566 / 0 ATBPM1 BTB-POZ and MATH domain 1 (.1.2) AT2G39760 447 / 2e-156 ATBPM3 BTB/POZ/MATH-domains containing protein (.1.2) AT3G03740 406 / 2e-139 ATBPM4 BTB-POZ and MATH domain 4 (.1) AT3G43700 386 / 3e-132 ATBPM6 BTB-POZ and MATH domain 6 (.1) AT5G21010 383 / 4e-131 ATBPM5 BTB-POZ and MATH domain 5 (.1) AT5G13060 65 / 5e-11 ABAP1 ARMADILLO BTB protein 1 (.1) AT5G19330 64 / 6e-11 ARIA ARM repeat protein interacting with ABF2 (.1.2) AT1G55760 54 / 6e-08 BTB/POZ domain-containing protein (.1) AT2G04740 51 / 9e-07 ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G200700 [exp] 722 / 0 AT3G06190 582 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.008G059600 [exp] 464 / 7e-163 AT2G39760 549 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2) Potri.010G199200 [exp] 460 / 1e-161 AT2G39760 528 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2) Potri.009G156500 [exp] 419 / 2e-145 AT3G03740 580 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.004G194200 [exp] 407 / 1e-140 AT3G03740 573 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.019G039500 [exp] 404 / 4e-139 AT3G03740 618 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.001G184200 [exp] 207 / 1e-64 AT3G03740 342 / 1e-116 BTB-POZ and MATH domain 4 (.1) Potri.008G150100 [exp] 67 / 1e-11 AT5G19330 1045 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.005G210000 [exp] 65 / 4e-11 AT5G19330 977 / 0.0 ARM repeat protein interacting with ABF2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021946 [exp] 631 / 0 AT3G06190 620 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Lus10004701 [exp] 439 / 6e-153 AT2G39760 598 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2) Lus10040267 [exp] 437 / 3e-152 AT2G39760 597 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2) Lus10003365 [exp] 407 / 2e-139 AT3G03740 601 / 0.0 BTB-POZ and MATH domain 4 (.1) Lus10008421 [exp] 406 / 6e-139 AT3G03740 599 / 0.0 BTB-POZ and MATH domain 4 (.1) Lus10041235 [exp] 367 / 3e-127 AT3G06190 339 / 8e-117 BTB-POZ and MATH domain 2 (.1.2) Lus10034070 [exp] 72 / 5e-13 AT5G19330 1092 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10010527 [exp] 71 / 5e-13 AT5G19330 1103 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10022039 [exp] 62 / 6e-10 AT5G13060 821 / 0.0 ARMADILLO BTB protein 1 (.1) Lus10042583 [exp] 60 / 2e-09 AT5G19330 822 / 0.0 ARM repeat protein interacting with ABF2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain CL0389 [poplar] [flax] TRAF PF00917 [poplar] [flax] MATH MATH domain
Representative CDS sequence Show only first row Show all	>Potri.010G029500.1 pacid=42799901 polypeptide=Potri.010G029500.1.p locus=Potri.010G029500 ID=Potri.010G029500.1.v4.1 annot-version=v4.1 ATGGGCACAATCAGGTTTTCTAGCAGAGACCTCCCAGCAGCACCTCCCACATCAAACCCATCATCATCAATTCCAACAAAAACAACATCATCTTCTATAA CGGAAACCGTAAATGGGTCTCATGAATTCAAGATCGGTGGCTATTCTCTCTCGAAAGGCATGGGGGTAGGCAAATACATCGCATCGGATACTTTTTATAT TGGTGGATATGCATGGGCTATATATTTCTACCCAGATGGTAAGAGCCCTGAAGATAATGCCACTTATGTCTCCTTATTCATTGCCCTTGCTAGCGAGGGG ACGGATGTTAGGGCTTTGTTTGAATTGTCGTTGATGGATCAAAGTGGGAAAGAAAGACATAAGGTTCATAGCCATTTTGGGAGAGCCCTTGAGAGCGGGC CCTATACGCTTAAGTATCGTGGCAGTATGTGGGGTTATAAACGATTTTATAGAAGGAATCAATTAGAGACATCAGACTATCTTAAGGATGATACCCTACT AGTTCGCTGCTGTGTTGGTGTTGTTAAGTCTCACACCGAGGGGCCTAAGACCTACACCATTTCCGTGCCACCTTCCAATATTGGTCAGCATTTTGGAAAG CTTTTAGACAGTGGAACGGGAACTGATGTAAATTTTGAAGTTGATGGAGAAACCTTTGCTTCTCACAAAATAGTTCTGGCTGCACGCTCACCAGTGTTTA GAGCACAGCTTTTTGGTCCAATGAAAGATCAAAACACTCAATGCATCAAAGTTGAAGACATGGAAGCTCCGGTTTTTAAGGCGTTAATCCATTTTATGTA CTGGGATGCCTTACCAGACATTGAGGAACTTGTTGGTTTGAACTCAAAATGGGTTTCTACACTGATGGCTCAGCATCTGCTTGCAGCAGCAGATCGCTAT GCACTTGAGAGGCTCAGATTGCTCTGTGAGGCTAGACTTTGTGAAGATGTTGCAATAAACACCGTTGCAACAACACTAGCTCTAGCGGAGCAGCATCAGT GCATCCAACTAAAGTCCGTATGTCTCAAATTCATTGCTTTGCCTGAAAATTTGAAAGCTGTGATGCAAACAGATGGGTTTGAATACTTAAAAGAAAGCTG CCCTTCTGTCATCACGGAGCTACTGCAATATGTTGCCAAAAATGGTGAGCGTTCTGTCATCACTTGTACACTTGGAAATGACACCTTAGATAGCGATATG AATGGAAGGCGGGTGAAGCAAAGGATACATTGA
AA sequence Show only first row Show all	>Potri.010G029500.1 pacid=42799901 polypeptide=Potri.010G029500.1.p locus=Potri.010G029500 ID=Potri.010G029500.1.v4.1 annot-version=v4.1 MGTIRFSSRDLPAAPPTSNPSSSIPTKTTSSSITETVNGSHEFKIGGYSLSKGMGVGKYIASDTFYIGGYAWAIYFYPDGKSPEDNATYVSLFIALASEG TDVRALFELSLMDQSGKERHKVHSHFGRALESGPYTLKYRGSMWGYKRFYRRNQLETSDYLKDDTLLVRCCVGVVKSHTEGPKTYTISVPPSNIGQHFGK LLDSGTGTDVNFEVDGETFASHKIVLAARSPVFRAQLFGPMKDQNTQCIKVEDMEAPVFKALIHFMYWDALPDIEELVGLNSKWVSTLMAQHLLAAADRY ALERLRLLCEARLCEDVAINTVATTLALAEQHQCIQLKSVCLKFIALPENLKAVMQTDGFEYLKESCPSVITELLQYVAKNGERSVITCTLGNDTLDSDM NGRRVKQRIH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06190		ATBPM2	BTB-POZ and MATH domain 2 (.1....		Potri.010G029500 [exp]	0	1
AT1G27050	HD	ATHB54	homeobox protein 54 (.1)		Potri.010G034500 [exp]	7.93	0.7677
AT1G75180			Erythronate-4-phosphate dehydr...		Potri.002G260900 [exp]	8.00	0.7266
AT3G61800			unknown protein		Potri.014G099300 [exp]	18.05	0.7632
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Potri.009G107550 [exp]	18.97	0.6623
					Potri.018G105200 [exp]	21.67	0.7397
AT5G52980			unknown protein		Potri.003G093800 [exp]	22.60	0.6616
AT5G61230		PIA2, ANK6	phytochrome interacting ankyri...		Potri.003G104400 [exp]	40.80	0.7085
AT1G09660			RNA-binding KH domain-containi...		Potri.003G005500 [exp]	52.33	0.6858
AT1G01350	C3HZnF		Zinc finger (CCCH-type/C3HC4-t...		Potri.014G097300 [exp]	52.34	0.7163
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Potri.003G071700 [exp]	53.66	0.6282	ERF39,ERF1.4

Compare expression of checked genes

Potri.010G029500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.