Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19020 789 / 0 MEF18 mitochondrial editing factor 18 (.1) AT2G22070 412 / 2e-133 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G13600 379 / 2e-121 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 365 / 1e-115 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22410 353 / 5e-112 SLO1 SLOW GROWTH 1 (.1) AT3G22690 350 / 6e-109 unknown protein AT1G25360 346 / 5e-108 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 340 / 1e-105 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 336 / 2e-103 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G68930 323 / 1e-99 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G085500 [exp] 417 / 2e-135 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.006G245300 [exp] 396 / 2e-126 AT3G22690 570 / 0.0 unknown protein Potri.005G011000 [exp] 387 / 2e-123 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G136200 [exp] 374 / 3e-119 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.002G075200 [exp] 365 / 2e-116 AT1G77010 835 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G083700 [exp] 368 / 8e-116 AT3G22690 1050 / 0.0 unknown protein Potri.018G040100 [exp] 364 / 1e-115 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 359 / 3e-114 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G019500 [exp] 357 / 1e-113 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034022 [exp] 460 / 9e-155 AT5G19020 353 / 7e-114 mitochondrial editing factor 18 (.1) Lus10016425 [exp] 407 / 2e-131 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030908 [exp] 379 / 2e-116 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10010901 [exp] 348 / 3e-113 AT3G15930 360 / 2e-118 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019731 [exp] 353 / 4e-111 AT2G13600 436 / 3e-143 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033026 [exp] 351 / 3e-110 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 348 / 7e-110 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013540 [exp] 350 / 2e-109 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030581 [exp] 360 / 3e-109 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10000213 [exp] 335 / 7e-105 AT2G13600 435 / 8e-144 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.010G029900.1 pacid=42800088 polypeptide=Potri.010G029900.1.p locus=Potri.010G029900 ID=Potri.010G029900.1.v4.1 annot-version=v4.1 ATGACCCAATCTTTCAAGCTCAGATCTCTTCTTCGCTCTCTCATTTCCTCTCCTCCTCCTTCTCCAACACTCACTTCTCTCAAATGGGTCTCCACAAAAA CCTCCCCAGCCTCACTTCTTCAATCACAACAATACCTTCTTCACCATATCCAACATCTCCTCTCTCTCAAAGCACACCAGAAAAACTTCAATTACGAGCG CTCTTTAATCTCAGCTTTAAAGTCCTGCGCAACAACCCATTTGGCTATCTCTCAAGGCCGAGGCCAACAAATCTATTGCCTTGTTTTCAAATCAGGCCTT GATTCAAACACTTTCATACGAAATAGCTTGATTAACATGTATTCCAAATGTGGATTTTTCGGTCTTGCAAAATCATTGTTTGATTCGTGTCCTAAGTTGG ACCCTGTGTCATGTAATATAATGATTTCTGGGTATGTAAAATCTGGAAATTTAGATGACGCACGCAAGTTGTTTGAAGTAATGCCTCAAAAAGGTTGTGT TTCATATACTACGATGATAATGGGCTTTGTTAAAAATGATTTTTGGGGTGAGGCAATTAAGGTTTATAAGGAAATGAGAAGTGTGGGTGTGGTACCTAAT GAGGTGACTATGGCAAGTGTTATATCGGCTTGTTGTCGTGTGGGTAGGATTTGGGATTGTAGAATGCTTCACGGATTAGTTATCAAGATGATGTTTGACG GGTTCGTTCTTGTTTCAACAAATTTGTTAAACATGTACTGTGCTTCTTCGAGTTTAGGCGAAGCGAGAGCTTTGTTTGATGAGATGCAAGAGAAGAATGT AGTTTCGTGGAATGTGATGTTAAATGGGTATTCCAAGGCAGGGTTTGCCAATTTGGCTAAGGAAGTGTTTGAGATGATTCCAGATAAAGATATTGTTTCA TGGGGCACAATCATTGATGGTTACGTTCGAGTAGAAAGGTTAAGAGAAGCGCTCATGATGTATCGTTTGATGGTCTCTACAGGGTTGGGACCTAGTGAAG TAACGATGATTGATTTAATTTCTGCATGTGGGAGAGCAATGGCAATTGTTGAGGGTCAGCAATTGCACTGCGTTGTTGTGAAGACAAGTTTTGACTGTTA TGACTTTGTGCAGGCGACAGTTATCCATTTTTACTCAGCTTGTGGCAGGATTAATGAGGCTTGTTTTCAATTAGAGTTCGGCATTAAGGACCATGTTGCT TCTCGAAATGCTCTCATAGCAGGATTTATACGAAATAGAATAATTGATCAGGCAAGGGAATTATTTAATGAGATGCCTGAGAGAGATGTCTTTTCATGGA GTACGATGATTTCTGGTTATACACAAAGTGACCAGCCTGGCATGGCTTTGGAGCTGTTTCATAGGATGGTAACTAGTGGAATCCGACCAAATGAAGTGAC AATGGTTAGTGTTTTCTCAGCAATTGCTGCTTTAGGCACATTGAAAGAAGGGAGATGGGCCCATGAATATGTGCATTATAACTCCATCCCTCTAAATGAC AACTTAAGTGCTTCAATCATCGACATGTATGCCAAATGTGGTAGCATCAATACTGCCTTAGAAGTGTTCTATCAAATTCGAGATAAGGCATCTACTGTCT CGCCGTGGAACACCATAATATGTGGGCTGGCCACCCATGGACATGCAAAATTGTCTCTTGAAATATATTCAGACTTGCAAAGGCGCCATATTAAGCTCAG TGCAATCACTTTCATTGGAGTTCTTAGTGCGTGTTGCCATGCTGGGTTGGTGGGGCTAGGGAAGAGCTATTTTAAGAGCATGAAGTCCAAATACAATATA GATCCTGATATCAGGCATTATGGTTGTATGGTTGATCTCTTGGGCAAAGCTGGGCGACTTGAGGAAGTCGAGGAACTGATTCGAAGCATGCCTATGAAGG CTGATGTTGTTATTTGGGGCATGTTGTTGTCAGCATGTAAAACACATCGTAACATAACTATAGGAGAAAGGGCTGCAGAAAATTTGGCCAAGTTGGATCC ATCTCATGGGCCAAGTAGAATCCTTTTATCCAACTTATATGCAGATGTGGGGAGGTGGGAGGACGCTTTTTTGGTGAGGAGAGTTATGCAAAGCCATAGA ATGCATAGATTGCCGGGATATAGTGGTGTTGTGTGA
AA sequence Show only first row Show all	>Potri.010G029900.1 pacid=42800088 polypeptide=Potri.010G029900.1.p locus=Potri.010G029900 ID=Potri.010G029900.1.v4.1 annot-version=v4.1 MTQSFKLRSLLRSLISSPPPSPTLTSLKWVSTKTSPASLLQSQQYLLHHIQHLLSLKAHQKNFNYERSLISALKSCATTHLAISQGRGQQIYCLVFKSGL DSNTFIRNSLINMYSKCGFFGLAKSLFDSCPKLDPVSCNIMISGYVKSGNLDDARKLFEVMPQKGCVSYTTMIMGFVKNDFWGEAIKVYKEMRSVGVVPN EVTMASVISACCRVGRIWDCRMLHGLVIKMMFDGFVLVSTNLLNMYCASSSLGEARALFDEMQEKNVVSWNVMLNGYSKAGFANLAKEVFEMIPDKDIVS WGTIIDGYVRVERLREALMMYRLMVSTGLGPSEVTMIDLISACGRAMAIVEGQQLHCVVVKTSFDCYDFVQATVIHFYSACGRINEACFQLEFGIKDHVA SRNALIAGFIRNRIIDQARELFNEMPERDVFSWSTMISGYTQSDQPGMALELFHRMVTSGIRPNEVTMVSVFSAIAALGTLKEGRWAHEYVHYNSIPLND NLSASIIDMYAKCGSINTALEVFYQIRDKASTVSPWNTIICGLATHGHAKLSLEIYSDLQRRHIKLSAITFIGVLSACCHAGLVGLGKSYFKSMKSKYNI DPDIRHYGCMVDLLGKAGRLEEVEELIRSMPMKADVVIWGMLLSACKTHRNITIGERAAENLAKLDPSHGPSRILLSNLYADVGRWEDAFLVRRVMQSHR MHRLPGYSGVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19020		MEF18	mitochondrial editing factor ...		Potri.010G029900 [exp]	0	1
AT2G33760			Pentatricopeptide repeat (PPR)...		Potri.004G043400 [exp]	1.41	0.9505
AT3G46790		CRR2	CHLORORESPIRATORY REDUCTION 2,...		Potri.009G037600 [exp]	2.44	0.9495	CRR2.1
AT4G02750			Tetratricopeptide repeat (TPR)...		Potri.016G019900 [exp]	3.46	0.9312
AT5G46100			Pentatricopeptide repeat (PPR)...		Potri.011G057900 [exp]	4.58	0.9370
AT2G44880			Pentatricopeptide repeat (PPR-...		Potri.014G046200 [exp]	5.91	0.9340
AT5G44230			Pentatricopeptide repeat (PPR)...		Potri.005G119000 [exp]	6.92	0.9041
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Potri.001G217600 [exp]	7.48	0.9308
AT1G30010			Intron maturase, type II famil...		Potri.004G132450 [exp]	8.00	0.9344
AT1G28690			Tetratricopeptide repeat (TPR)...		Potri.004G054000 [exp]	9.59	0.8862
AT5G52850			Pentatricopeptide repeat (PPR)...		Potri.004G071800 [exp]	9.74	0.9083

Compare expression of checked genes

Potri.010G029900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.