Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06180 219 / 5e-72 Ribosomal protein L34e superfamily protein (.1) AT5G19025 184 / 3e-58 Ribosomal protein L34e superfamily protein (.1) AT5G15260 91 / 4e-22 Ribosomal protein L34e superfamily protein (.1) AT3G01170 88 / 4e-21 Ribosomal protein L34e superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G201700 [exp] 257 / 4e-87 AT3G06180 208 / 1e-67 Ribosomal protein L34e superfamily protein (.1) Potri.004G121900 [exp] 89 / 2e-21 AT3G01170 234 / 3e-78 Ribosomal protein L34e superfamily protein (.1) Potri.017G084500 [exp] 87 / 1e-20 AT3G01170 237 / 4e-79 Ribosomal protein L34e superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004432 [exp] 216 / 2e-70 AT3G06180 241 / 3e-80 Ribosomal protein L34e superfamily protein (.1) Lus10034022 [exp] 222 / 3e-69 AT5G19020 353 / 7e-114 mitochondrial editing factor 18 (.1) Lus10005234 [exp] 59 / 2e-10 AT3G01170 179 / 6e-57 Ribosomal protein L34e superfamily protein (.1) Lus10030686 [exp] 50 / 3e-07 AT3G01170 169 / 6e-53 Ribosomal protein L34e superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G030000.1 pacid=42799209 polypeptide=Potri.010G030000.1.p locus=Potri.010G030000 ID=Potri.010G030000.1.v4.1 annot-version=v4.1 ATGCACCATCTCCTCCTCCCCCTCTTCTTCTTCACCATGCCCCCTTCTTCTTCCTTCACACCAAAACCCCACAAATCTTCATCTTCAAACACTGCAAACA CGAACTCCAATCCAAATTCAACCTCCCTCCTCTGCAAACACTCTCCATCTGCAACTCTCGACCTTCTCATCCTAATCTTAGTCCTTTTCTCCGGCACTTT CCTCTTAACCTCTTACTTCTCTTACATCTTTAACTCCCTTTCTCTCCTCCTCTCTAACAGCTCTCTTTCCCTTCACTTCCCTCCTTTCTCTTACATTCTT GGCTTCTTCTCTCTTTTCATTCTCTCCATCCTTTTCTTTGAGTTCTGCTGTGGACCCAGATCTCGAAAGTGTCACCAACCTGGCTGTAAAGGCTTCAAGA AAGCGATTGAGTTTGATTTGCAATTGCAGACTGAAGATTGTCTTAAATCCACTGCTGCTAATGACGTTGATAAGTTGCCTTGGAAAGGTGGGACTGTATC TAATCCTGATTATGAGTGTTTGAGAGCTGAATTGAGGAAGATGGCTCCGCCTAATGGGAGGGCTGTTTTGCTTTTTCGTTCTAAGTGTGGTTGCCCTGTT GCTAAGCTGGAAGGATGGGGGCCTAAACGTGGTCGCCGGCATAAAAGGGCTCTGGCTAGTGTGGCTGCTAATGGAGGAGATCATCGTTGA
AA sequence Show only first row Show all	>Potri.010G030000.1 pacid=42799209 polypeptide=Potri.010G030000.1.p locus=Potri.010G030000 ID=Potri.010G030000.1.v4.1 annot-version=v4.1 MHHLLLPLFFFTMPPSSSFTPKPHKSSSSNTANTNSNPNSTSLLCKHSPSATLDLLILILVLFSGTFLLTSYFSYIFNSLSLLLSNSSLSLHFPPFSYIL GFFSLFILSILFFEFCCGPRSRKCHQPGCKGFKKAIEFDLQLQTEDCLKSTAANDVDKLPWKGGTVSNPDYECLRAELRKMAPPNGRAVLLFRSKCGCPV AKLEGWGPKRGRRHKRALASVAANGGDHR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06180			Ribosomal protein L34e superfa...		Potri.010G030000 [exp]	0	1
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Potri.007G028300 [exp]	7.14	0.8583
AT2G32840			proline-rich family protein (....		Potri.001G229800 [exp]	11.48	0.8508
AT1G36280			L-Aspartase-like family protei...		Potri.010G193400 [exp]	16.61	0.8388
AT1G09520			unknown protein		Potri.010G002200 [exp]	19.13	0.8324
AT3G16210			F-box family protein (.1)		Potri.012G014300 [exp]	20.00	0.8106
AT1G65030			Transducin/WD40 repeat-like su...		Potri.012G107400 [exp]	20.56	0.8408
AT1G07030			Mitochondrial substrate carrie...		Potri.009G077600 [exp]	22.44	0.8308
AT1G80750			Ribosomal protein L30/L7 famil...		Potri.003G180700 [exp]	24.49	0.8147
AT3G06180			Ribosomal protein L34e superfa...		Potri.008G201700 [exp]	25.45	0.8160
AT5G01160			RING/U-box superfamily protein...		Potri.006G095600 [exp]	26.83	0.8305

Compare expression of checked genes

Potri.010G030000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.