Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14240 612 / 0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) AT4G14230 553 / 0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT1G03270 529 / 0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G33700 370 / 1e-124 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT2G14520 360 / 1e-120 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT5G52790 347 / 1e-114 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT1G47330 338 / 1e-110 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT3G13070 55 / 7e-08 CBS domain-containing protein / transporter associated domain-containing protein (.1) AT1G55930 53 / 5e-07 CBS domain-containing protein / transporter associated domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G202100 [exp] 752 / 0 AT4G14240 632 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) Potri.017G147900 [exp] 382 / 1e-127 AT5G52790 580 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.014G012400 [exp] 363 / 1e-121 AT2G14520 516 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.009G082300 [exp] 360 / 1e-120 AT2G14520 593 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.001G288000 [exp] 358 / 6e-120 AT2G14520 620 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.014G196900 [exp] 315 / 4e-101 AT1G47330 575 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.001G362100 [exp] 53 / 4e-07 AT1G55930 858 / 0.0 CBS domain-containing protein / transporter associated domain-containing protein (.1) Potri.002G260401 [exp] 47 / 7e-07 AT1G47330 58 / 3e-11 CBS domain-containing protein with a domain of unknown function (DUF21) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034024 [exp] 647 / 0 AT4G14230 675 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10004429 [exp] 629 / 0 AT4G14230 654 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10012375 [exp] 550 / 0 AT1G03270 627 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10028010 [exp] 544 / 0 AT1G03270 635 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10005259 [exp] 375 / 2e-126 AT2G14520 679 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10039289 [exp] 367 / 2e-122 AT5G52790 557 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10032715 [exp] 350 / 2e-115 AT1G47330 646 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10027528 [exp] 345 / 1e-113 AT5G52790 560 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10030665 [exp] 330 / 1e-110 AT2G14520 498 / 3e-178 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10012476 [exp] 309 / 2e-100 AT2G14520 591 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01595 [poplar] [flax] DUF21 Cyclin M transmembrane N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.010G030200.1 pacid=42797982 polypeptide=Potri.010G030200.1.p locus=Potri.010G030200 ID=Potri.010G030200.1.v4.1 annot-version=v4.1 ATGCAACTGTTAAATGCGGTGATGGCGACGAGGATGTTGACGGAGTTAGGAGGTCAATCAAACGGAGACGAAATACCGTTTGGATCGTTCTCATGGTTTG CGTACGCAGGAATTTCTTGCTTCCTCGTTCTCTTCGCAGGTATCATGTCTGGGCTTACCTTAGGCCTCATGTCTCTTGGTCTTGTCGACCTCGAAATTCT CCAACGTAGCGGCACTTCCACCGAGAAAAAACAAGCTGCTGCGATTCTTCCGGTGGTTCAAAAACAGCACCAGCTTCTGGTGACTCTGCTTCTTTGCAAT GCTGCTTCTATGGAGGCTCTTCCTATATACTTGGATAAGCTTTTCAATCAGTATGTTGCTATAATACTTTCCGTGACTTTTGTTCTAGCTTTTGGAGAGG TTATTCCACAATCAATATGCACCAGATATGGATTAGCTGTCGGGGCCAATTTTGTATGGCTTGTGCGAATTTTAATGATACTTTGTTATCCAATTTCATA TCCCATCGGGAAGGTTCTGGATTGTGTATTGGGACATAACGAAGCATTATTTAGACGGGCACAATTAAAAGCCCTTGTTTCCATCCACGGCTTGGAGGCT GGCAAGGGTGGTGAACTCACACATGATGAGACAACAATTATTAGTGGGGCACTAGATTTGACTGAAAAGACTGCTGAAGAGGCTATGACACCTATTGAAT CAACTTTCTCCCTAGATGTCAATTCAAAGTTGGACTGGGAGGCAATGGGAAAAGTTCTTGCACGCGGTCATAGCAGAGTTCCTGTATATTCTGGGAATCC AAAAAATATCATTGGACTACTTTTGGTGAAAAGCCTTCTCACTGTTCGACCTGAAACAGAGACCCCAGTTAGTGCAGTTTCAATCCGAAGAATTCCACGG GTTCCATCTGATATGCCTCTGTATGATATACTGAATGAGTTTCAAAAGGGTAGCAGTCATATGGCAGCTGTTGTGAAGGCCAAGGGGAAAAGCAAGGCTC TTCCACCAACAATTGATGGGAAAGAACATGAAGGAAACAAAGTAACTGGCAAAGAGTCCCAATTGACTACTCCATTGTTGTCCATGCCAAATGAGAAGTT AGATAGCGTTGTTGTGGACATGGATAGGGTTTCAAGGCCAAGTAGGCAGCCTTCTTTACAGCGTAATGATGCTTCAATTAAAGGAATGACCCTGCTATCA GAGGACATTGAAGATGGTGAAGTAATTGGTATCATCACCCTAGAAGATGTATTTGAAGAACTTCTGCAGGAGGAGATTGTGGATGAAACAGATGAATATG TAGATGTACATAAAAGAATCCGTGTGGCTGCAGCTGCAGCTGCTTCATCTGTGGCGCGGGCACCATCAAGTCGAAGGTTAACAGCCAATAAGGGATCTGG AGGCCACCAAAGTAAGCCGGGGCAAACACTGAAGAAATCGGAGAATGATTCAAGTGCCACAAGATTACAAGGGACTGCCGGTGAGCCTTTTCTTGGAAAC AAGAGATAA
AA sequence Show only first row Show all	>Potri.010G030200.1 pacid=42797982 polypeptide=Potri.010G030200.1.p locus=Potri.010G030200 ID=Potri.010G030200.1.v4.1 annot-version=v4.1 MQLLNAVMATRMLTELGGQSNGDEIPFGSFSWFAYAGISCFLVLFAGIMSGLTLGLMSLGLVDLEILQRSGTSTEKKQAAAILPVVQKQHQLLVTLLLCN AASMEALPIYLDKLFNQYVAIILSVTFVLAFGEVIPQSICTRYGLAVGANFVWLVRILMILCYPISYPIGKVLDCVLGHNEALFRRAQLKALVSIHGLEA GKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKVLARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPR VPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKALPPTIDGKEHEGNKVTGKESQLTTPLLSMPNEKLDSVVVDMDRVSRPSRQPSLQRNDASIKGMTLLS EDIEDGEVIGIITLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLTANKGSGGHQSKPGQTLKKSENDSSATRLQGTAGEPFLGN KR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14240			CBS domain-containing protein ...		Potri.010G030200 [exp]	0	1
AT3G06760			Drought-responsive family prot...		Potri.011G057200 [exp]	3.46	0.7215
AT1G16210			unknown protein		Potri.009G140200 [exp]	9.48	0.6726
AT5G42090			Lung seven transmembrane recep...		Potri.001G083100 [exp]	14.49	0.6935
AT1G23040			hydroxyproline-rich glycoprote...		Potri.010G113300 [exp]	17.14	0.6351
AT4G19450			Major facilitator superfamily ...		Potri.001G128200 [exp]	18.02	0.6370
AT4G02890		UBQ14	Ubiquitin family protein (.1.2...		Potri.004G021500 [exp]	21.49	0.6989
AT5G41210		GSTU12, GST10, ...	glutathione S-transferase THET...		Potri.001G105600 [exp]	22.24	0.6608	ATGSTT1.3
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Potri.016G071500 [exp]	24.00	0.5968	NHL1.1
AT1G68140			Protein of unknown function (D...		Potri.003G021800 [exp]	24.49	0.6023
AT4G31130			Protein of unknown function (D...		Potri.006G280900 [exp]	25.41	0.6195

Compare expression of checked genes

Potri.010G030200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.