Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19070 321 / 7e-111 SNARE associated Golgi protein family (.1) AT1G03260 291 / 6e-99 SNARE associated Golgi protein family (.1) AT1G22850 64 / 2e-11 SNARE associated Golgi protein family (.1) AT2G02370 47 / 8e-06 SNARE associated Golgi protein family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G202600 [exp] 421 / 2e-150 AT5G19070 338 / 1e-117 SNARE associated Golgi protein family (.1) Potri.013G099600 [exp] 67 / 2e-12 AT1G22850 305 / 6e-102 SNARE associated Golgi protein family (.1) Potri.019G071900 [exp] 65 / 7e-12 AT1G22850 330 / 8e-113 SNARE associated Golgi protein family (.1) Potri.003G151800 [exp] 40 / 0.0007 AT2G02370 377 / 2e-131 SNARE associated Golgi protein family (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034028 [exp] 338 / 2e-117 AT5G19070 363 / 3e-127 SNARE associated Golgi protein family (.1) Lus10004421 [exp] 338 / 5e-117 AT5G19070 361 / 2e-126 SNARE associated Golgi protein family (.1) Lus10021942 [exp] 286 / 4e-97 AT5G19070 343 / 9e-120 SNARE associated Golgi protein family (.1) Lus10028016 [exp] 236 / 3e-77 AT1G03260 328 / 2e-113 SNARE associated Golgi protein family (.1) Lus10012371 [exp] 204 / 4e-65 AT1G03260 274 / 1e-92 SNARE associated Golgi protein family (.1) Lus10041229 [exp] 138 / 2e-36 AT3G23590 1595 / 0.0 REF4-related 1 (.1) Lus10006162 [exp] 59 / 6e-10 AT1G22850 394 / 2e-137 SNARE associated Golgi protein family (.1) Lus10041062 [exp] 59 / 9e-10 AT1G22850 377 / 2e-131 SNARE associated Golgi protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09335 [poplar] [flax] SNARE_assoc SNARE associated Golgi protein
Representative CDS sequence Show only first row Show all	>Potri.010G030800.4 pacid=42797196 polypeptide=Potri.010G030800.4.p locus=Potri.010G030800 ID=Potri.010G030800.4.v4.1 annot-version=v4.1 ATGGCTGCTTTTACATGGGGTTCTCTTCTTAGGATCACTTTCTTTCTTCTCCTTATTGCCGCTGTTGTTTTCGGCTTCTTCACTCTCCCTGTTGAAAAGA TTTTGAAGGATTTCTTGTTATGGGTTGAGCAGGATCTTGGACCTTGGGGTCCTCTCGTACTGGCCGTTGCATATATTCCTCTAACAGTCCTGGCTGTTCC AGCAGCAGTGCTTACTCTTGGTGGTGGATATCTTTTTGGGTTGCCACTGGGCTTTGTTGCTGATTCTATTGGTGCCACCATTGGTGCCGGGGCAGCTTTT CTTCTAGGAAGAACGATTGGGAGATCTTTCGTTGTCTCTAAGTTGAAGGATTATCCGAAGTTTAGGTCAGTTGCAATTGCAATTCAGAAGTCTGGCTTCA AGATTGTTCTGCTGCTACGACTTGTTCCTTTACTGCCCTTTAACATGCTGAATTACCTGCTTTCTGTCACTCCTGTTCCGATAGGGGAATACATGCTGGC TTCCTGGATAGGAATGATGCCAATAACACTTGCTTTCGTATACATTGGAACAACTCTCAAGGATCTTTCTGATGTGACGCATGGGTGGAGTGAGTTTTCA ACTACTCGTTGGGTGTTTATCATATTGGGCCTTCTTGTATCTGTGGTTCTAATCTTTTGTGTTACTAAAGTCGCCAAGTCTGCTTTGGATAAAGCTCTGG CCGAAAATGAAGATCTAGATTTCATATTGGCCTCGTCACAATTAACTATTGTGGCGGATATTCCTGTTAATCTGAACCAGCCTCTTATTATCAAGATAGA CCCATCTGAAGACAAGCATGAAAAATGA
AA sequence Show only first row Show all	>Potri.010G030800.4 pacid=42797196 polypeptide=Potri.010G030800.4.p locus=Potri.010G030800 ID=Potri.010G030800.4.v4.1 annot-version=v4.1 MAAFTWGSLLRITFFLLLIAAVVFGFFTLPVEKILKDFLLWVEQDLGPWGPLVLAVAYIPLTVLAVPAAVLTLGGGYLFGLPLGFVADSIGATIGAGAAF LLGRTIGRSFVVSKLKDYPKFRSVAIAIQKSGFKIVLLLRLVPLLPFNMLNYLLSVTPVPIGEYMLASWIGMMPITLAFVYIGTTLKDLSDVTHGWSEFS TTRWVFIILGLLVSVVLIFCVTKVAKSALDKALAENEDLDFILASSQLTIVADIPVNLNQPLIIKIDPSEDKHEK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19070			SNARE associated Golgi protein...		Potri.010G030800 [exp]	0	1
AT1G60430		ARPC3	actin-related protein C3 (.1.2...		Potri.006G063400 [exp]	1.41	0.8993
AT1G26670		VTI1B, ATVTI12,...	VESICAL TRANSPORT V-SNARE 12, ...		Potri.010G164300 [exp]	8.00	0.8675	VTI12.2
AT2G45530			RING/U-box superfamily protein...		Potri.011G149200 [exp]	13.56	0.8871
AT3G51390			DHHC-type zinc finger family p...		Potri.007G060100 [exp]	13.96	0.8712
AT1G75020		LPAT4	lysophosphatidyl acyltransfera...		Potri.002G133100 [exp]	20.92	0.8848
AT5G05080		ATUBC22, UBC22	ubiquitin-conjugating enzyme 2...		Potri.006G026900 [exp]	21.33	0.8774
AT5G52210		ATGB1, ATARLB1	GTP-binding protein 1 (.1.2)		Potri.012G138500 [exp]	21.54	0.8757
AT1G09150			pseudouridine synthase and arc...		Potri.013G013700 [exp]	22.04	0.8756
AT1G04555			unknown protein		Potri.010G064500 [exp]	25.65	0.8723
AT4G15830			ARM repeat superfamily protein...		Potri.010G014200 [exp]	32.00	0.8836

Compare expression of checked genes

Potri.010G030800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.