Plant FIBer expression Database

Potri.010G030900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G06150 739 / 0 unknown protein
AT5G19060 697 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G202500
[exp]
1049 / 0 AT3G06150 721 / 0.0 unknown protein
Potri.008G202400
[exp]
1039 / 0 AT3G06150 734 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034027
[exp]
812 / 0 AT3G06150 743 / 0.0 unknown protein
Lus10004424
[exp]
801 / 0 AT3G06150 747 / 0.0 unknown protein
Lus10026459
[exp]
714 / 0 AT5G19060 673 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Potri.010G030900.1 pacid=42799153 polypeptide=Potri.010G030900.1.p locus=Potri.010G030900 ID=Potri.010G030900.1.v4.1 annot-version=v4.1
ATGCCTGAAAAGGGAGAGAACCAATCATGGCTTTTTTACCGTTCAAACTTTGTGCTTCAATGGCGTCTTCACATGCTCACAGCTTTTGTTTTCTTTGTCA
TGGTTGTTGTTTGGAGCATGGATGGCGGTACCATTAAAAGCGTTGTAGAATCAAGAAGGTTCGCCAAGCAATATTTGACCATTAACCCTCACACACAACA
CCTTCTCACAAATCTAACCGAGCAGAAGCAGCAGCAGCAGCAACAAACCCTTCAAAACTTCTCTACAATCACAAAGAACGTCACAGCAGACACCCCATTA
GCCCAAGAGACCAACAACAATAATACCAGTGCCCCTCCTAGATTTAACATGGTACTAAACAACGACAAGAATGTTTCTTTTCCTCAGAATCATTCAGATG
GAGTTTTGGAGAATCCAGCCCCAGGAAGGCATCAATCAGGTGGTAATGTGAAGTGGGTATTAACTGAATTGGAGCCAAACTTGACTGCATATCTTCTTTC
AAGGTGGTTAGCCTCCGGAGGGGAGCCTTGTAGAGAGTCACGTACAGTGGAGATCGTGATTCCTGGATTGGATGATAAAGATTTGATTGAGTTGACAGCT
GGTGATCGTCATGAATTTGGTTTTCAAGCACTGGATGAGTCCAATAATCTTGTTTGTTTAGGTGGAGATTATTTTGAGACCGATCTTTCAGGGGAGACAT
GGAAATCAAGGCCTTTAGTCAGAGATTTTGGAAATGGGTCTTACTCTATTTCGCTTCAAGTTCATCCTGATTTTGCTGGTGATTATAATCTTACTGTTAT
TTTGCTCTATAGGCATTTTGAAGGTCTTAAATTTTCACCGTGGAGATTTGCGTTTGATAAACAATTGCGTAAGTTTCAAATCAAGTTTGTTAAAGGTCAC
ACTCAATTGCCAAAGATTAAAACTTGTCAAAAATCTGATTTCATTAGAGATCTTTGGTTAGGAAGGTGGACTAGGTATGGTAAAAATGATGGCTGTCAAA
TTAGTAATGATGGCCGGTACCGCTGTCTCGCGCCAGATTTTCCATGCCAAAGTCCTTGGTGTAGTGGTTCTTTAGGGATGTTAGAGAGTAATGGCTGGGT
GTATTCTAGTCATTGTTCATTTAGGCTGTTTTCAGCTGATTCTTCTTGGAATTGCTTGAAGAATCGGTGGATTTTCTTTTGGGGTGATTCAAATCATGTT
GATACTATAAGAAACATGCTCAATTTTGTGTTGGATTTGCCTCAAATACCATCAGTTCCTAGACGGTTTGATATGAACTTTTCAAACCCGAACGATGCTT
CTCAGACTGTTCGGATTACTAGCATTTTCAATGGTCATTGGAATGAAACACTGAATTATGAAGGATTTAATTCCTTGGCGGATGAAGGATTTAGGAATTT
GTTGAAGAAGTACTTCTCAGAGGACACGTTGCCAGACACTATAATCATGAATTCAGGTTTACATGATGGTGTGCATTGGCGAAATTTGAGATCATATACG
GCGGGAGCTGACTATGCAGCATCATTCTGGAAAGAAGTTATGGATTCGGTGAGGCGGAGAGGATTGGCAGTTCCACTCATCTTTTACCGGACAACGGTAG
CCACCGGTGGGTATGCAAGGACACTGCAATTTAATCCGAACAAGATGGAGGTATATAATTGGGTTGCTTTAGAGAAATTTAGGCAAGCTGGGTTGGTTAC
TGGTGTGATAGATGACTTTGATATGACTTTTCCATGGCATTTTGACAATCGGTGCAATGACGGAGTACACTATGGCAGAGGTCCAGCAAAGATGAAGTGG
AGGGATGGTGTAATTGGCCACCAGTATTTTGTCGACCTCATGTTGGCTCATGTGCTGCTCAATGCTCTGTGTTCAAAATAG
AA sequence
>Potri.010G030900.1 pacid=42799153 polypeptide=Potri.010G030900.1.p locus=Potri.010G030900 ID=Potri.010G030900.1.v4.1 annot-version=v4.1
MPEKGENQSWLFYRSNFVLQWRLHMLTAFVFFVMVVVWSMDGGTIKSVVESRRFAKQYLTINPHTQHLLTNLTEQKQQQQQQTLQNFSTITKNVTADTPL
AQETNNNNTSAPPRFNMVLNNDKNVSFPQNHSDGVLENPAPGRHQSGGNVKWVLTELEPNLTAYLLSRWLASGGEPCRESRTVEIVIPGLDDKDLIELTA
GDRHEFGFQALDESNNLVCLGGDYFETDLSGETWKSRPLVRDFGNGSYSISLQVHPDFAGDYNLTVILLYRHFEGLKFSPWRFAFDKQLRKFQIKFVKGH
TQLPKIKTCQKSDFIRDLWLGRWTRYGKNDGCQISNDGRYRCLAPDFPCQSPWCSGSLGMLESNGWVYSSHCSFRLFSADSSWNCLKNRWIFFWGDSNHV
DTIRNMLNFVLDLPQIPSVPRRFDMNFSNPNDASQTVRITSIFNGHWNETLNYEGFNSLADEGFRNLLKKYFSEDTLPDTIIMNSGLHDGVHWRNLRSYT
AGADYAASFWKEVMDSVRRRGLAVPLIFYRTTVATGGYARTLQFNPNKMEVYNWVALEKFRQAGLVTGVIDDFDMTFPWHFDNRCNDGVHYGRGPAKMKW
RDGVIGHQYFVDLMLAHVLLNALCSK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G06150 unknown protein Potri.010G030900
[exp]
0 1
AT2G33360 Protein of unknown function (D... Potri.010G066200
[exp]
2.44 0.7969
AT5G59790 Domain of unknown function (DU... Potri.010G209600
[exp]
6.00 0.6944
AT5G60690 HD IFL1, REV REVOLUTA, INTERFASCICULAR FIBE... Potri.004G211300
[exp]
6.70 0.7262 Pt-HB1.7
AT1G08170 Histone superfamily protein (.... Potri.001G212200
[exp]
7.21 0.7375
AT5G43810 PNH, ZLL, AGO10 ZWILLE, PINHEAD, ARGONAUTE 10,... Potri.008G158800
[exp]
17.97 0.6856 AGO906,Pt-AGO1.2
AT1G34260 FAB1D FORMS APLOID AND BINUCLEATE CE... Potri.019G087000
[exp]
18.16 0.6990
AT3G46450 SEC14 cytosolic factor family ... Potri.001G237400
[exp]
20.49 0.6574
AT1G78955 CAMS1 camelliol C synthase 1 (.1) Potri.001G049100
[exp]
20.59 0.7238
AT5G51670 Protein of unknown function (D... Potri.015G131800
[exp]
21.21 0.7217
AT2G02220 ATPSKR1 phytosulfokin receptor 1 (.1) Potri.017G050700
[exp]
22.18 0.7197

Potri.010G030900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.