Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-NHX1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05030 793 / 0 ATNHX2, NHX2 sodium hydrogen exchanger 2 (.1.2) AT5G27150 763 / 0 AT-NHX1, ATNHX1, NHX1 Na+/H+ exchanger 1, Na+/H+ exchanger 1 (.1) AT3G06370 714 / 0 ATNHX4, NHX4 sodium hydrogen exchanger 4 (.1) AT5G55470 586 / 0 ATNHX3 Na+/H+ \(sodium hydrogen\) exchanger 3, ARABIDOPSIS THALIANA NA+/H+ \(SODIUM HYDROGEN\) EXCHANGER 3, Na+/H+ (sodium hydrogen) exchanger 3 (.1) AT1G79610 171 / 1e-46 ATNHX6 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1) AT1G54370 144 / 2e-37 NHX5, ATNHX5 NA+/H+ ANTIPORTER 5, sodium hydrogen exchanger 5 (.1) AT1G14660 52 / 1e-06 ATNHX8 SODIUM HYDROGEN EXCHANGER 8, Na+/H+ exchanger 8, Na+/H+ exchanger 8, Na+/H+ exchanger 8 (.1), Na+/H+ exchanger 8 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G045100 [exp] 825 / 0 AT3G05030 840 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.013G031700 [exp] 818 / 0 AT3G05030 834 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.014G134900 [exp] 742 / 0 AT3G05030 707 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.013G026600 [exp] 631 / 0 AT3G05030 548 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.016G000200 [exp] 154 / 8e-41 AT1G79610 724 / 0.0 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033840 [exp] 803 / 0 AT3G05030 854 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10004141 [exp] 801 / 0 AT3G05030 846 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10012801 [exp] 792 / 0 AT3G05030 790 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10040903 [exp] 749 / 0 AT3G05030 769 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10005934 [exp] 748 / 0 AT3G05030 768 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10001718 [exp] 724 / 0 AT3G05030 748 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10018989 [exp] 716 / 0 AT3G05030 750 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10016583 [exp] 602 / 0 AT5G55470 764 / 0.0 Na+/H+ \(sodium hydrogen\) exchanger 3, ARABIDOPSIS THALIANA NA+/H+ \(SODIUM HYDROGEN\) EXCHANGER 3, Na+/H+ (sodium hydrogen) exchanger 3 (.1) Lus10014891 [exp] 442 / 4e-152 AT5G55470 528 / 0.0 Na+/H+ \(sodium hydrogen\) exchanger 3, ARABIDOPSIS THALIANA NA+/H+ \(SODIUM HYDROGEN\) EXCHANGER 3, Na+/H+ (sodium hydrogen) exchanger 3 (.1) Lus10038727 [exp] 140 / 2e-35 AT1G79610 749 / 0.0 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF00999 [poplar] [flax] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Potri.010G031500.1 pacid=42799666 polypeptide=Potri.010G031500.1.p locus=Potri.010G031500 ID=Potri.010G031500.1.v4.1 annot-version=v4.1 ATGGCAGATATTTTATGGAAAATGGGAGCAATGTTATCGTCTGATCATAGCTCAGTGGTGCCAATAAACCTGTTCGTGGCACTACTTTGTGCGTGTATAG TAATTGGTCATTTACTAGAGGAGCAGCGATGGATGAACGAGTCCATTACTGCACTTGCTGTAGGTTTGTGCACTGGAGTTGTGATTTTGCTAACAACAGG AGGAAAGAGCTCGCATCTCTTAGTTTTCAGCGAAGATTTATTCTTTATTTATCTGCTTCCGCCAATCATCTTTAACGCTGGGTTCCAGGTAAAGAAGAAG CAGTTTTTCCGCAACTTCATGACTATCATTCTGTTTGGCGCAGTCGGTACTCTGATATCCACTGCCATCATTTCAATAGGCGCCACTCACTTTTTCAAGA AAATGAACATCAGTTCCCTCAGAATTGGAGACTATCTTGCAATTGGAGCAATATTTTCAGCCACGGATTCTGTTTGTACCTTGCAGGTTCTTAACCAGGA TGAGACGCCTTTATTATACAGTCTGGTTTTTGGGGAAGGTGTAGTAAATGATGCAACATCAGTGGTGCTTTTCCATGCAATTCAGAGCATTGACCTATCT CACATCAACTCAAGCATTGCAGCTGAATTTCTCGGAAACTTTCTATATTTGTTTATCTCAAGCACCATACTGGGAGTTCTAACTGGACTACTTAGTGCAT ACATTATCAAAAAGCTCTACTTCGGCAGGCATTCTACCGATCGTGAGGTTGCTCTTATGATACTCATGGCTTACCTTTCATATATGTTGGCCGAGCTATT CTATCTAAGCGCCATTCTCACTGTATTCTTTTGTGGGATTGTTATGTCTCATTACACATGGCACAATGTAACTGAAAGTTCAAGGATAACAACTAAGCAT GCTTTTGCTACTTGGTCATTTGTTGCTGAGATCTTCATCTTCCTCTATGTTGGCATGGATGCCTTGGATATTGAAAAATGGAAGGTTGTAAGTGATAGCC CTGGAACATCAGTTATGGTGAGTTCAATACTCTTGGGATTGGTTCTAGTTGGAAGAGCAGCCTTTGTTTTCCCTTTATCCTTTTTATCCAACTTGACTAA GAAGTTCCCGTATGAGAAAATAGACATAAAGCAACAAGTAACAATATGGTGGGCAGGTCTTATGCGTGGTGCTGTTTCTATGGCTCTTGCTTATAATCAG TTCACCAGGTCAGGCCATACTCATTTGCATGGCAATGCAATCATGATCACCAGCACAATTACAGTTGTCCTTTTCAGCACAGTGGTGTTTGGATTGATGA CTAAACCACTAGTGAGGATCTTGCTTCCATCACAAAAACACACTGCCAGCATGTTGTCTTCTGAACCATCTAGTCCTAAATCCTTTGCTGTGCCACTGCT CAATAGACAGGATTCAGAGGACAACCAGGCCAGCCACAACGTGCCCCGTCGAACCAGCTTAAGGATGCTCTTGAGCACCCCTTCTCACACAGTCCACCAC TATTGGAGAAAATTTGATAATAGCTTCATGCGACCTGTTTTTGGTGGCCGGGGTTTTGTACCATTTGTACCTTGCTCCCCCACTGACCAAAGCGTTCATC AATGGCAGTGA
AA sequence Show only first row Show all	>Potri.010G031500.1 pacid=42799666 polypeptide=Potri.010G031500.1.p locus=Potri.010G031500 ID=Potri.010G031500.1.v4.1 annot-version=v4.1 MADILWKMGAMLSSDHSSVVPINLFVALLCACIVIGHLLEEQRWMNESITALAVGLCTGVVILLTTGGKSSHLLVFSEDLFFIYLLPPIIFNAGFQVKKK QFFRNFMTIILFGAVGTLISTAIISIGATHFFKKMNISSLRIGDYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFHAIQSIDLS HINSSIAAEFLGNFLYLFISSTILGVLTGLLSAYIIKKLYFGRHSTDREVALMILMAYLSYMLAELFYLSAILTVFFCGIVMSHYTWHNVTESSRITTKH AFATWSFVAEIFIFLYVGMDALDIEKWKVVSDSPGTSVMVSSILLGLVLVGRAAFVFPLSFLSNLTKKFPYEKIDIKQQVTIWWAGLMRGAVSMALAYNQ FTRSGHTHLHGNAIMITSTITVVLFSTVVFGLMTKPLVRILLPSQKHTASMLSSEPSSPKSFAVPLLNRQDSEDNQASHNVPRRTSLRMLLSTPSHTVHH YWRKFDNSFMRPVFGGRGFVPFVPCSPTDQSVHQWQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Potri.010G031500 [exp]	0	1	Pt-NHX1.1
AT1G79760		DTA4	downstream target of AGL15-4 (...		Potri.001G189400 [exp]	1.41	0.9259	DTA4.1
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Potri.001G043600 [exp]	4.00	0.9182
AT5G64080		AtXYP1	xylogen protein 1, Bifunctiona...		Potri.003G020200 [exp]	6.00	0.9049
AT1G21090			Cupredoxin superfamily protein...		Potri.002G067600 [exp]	8.77	0.8900
AT2G21050		LAX2	like AUXIN RESISTANT 2 (.1)		Potri.004G172800 [exp]	10.58	0.8877	PtrAUX5
AT3G47830			DNA glycosylase superfamily pr...		Potri.015G071300 [exp]	10.72	0.8948
AT4G22860			Cell cycle regulated microtubu...		Potri.012G130300 [exp]	12.64	0.8579
AT3G56370			Leucine-rich repeat protein ki...		Potri.013G091000 [exp]	13.41	0.8839
AT5G51560			Leucine-rich repeat protein ki...		Potri.012G128700 [exp]	14.49	0.8907
AT1G76520			Auxin efflux carrier family pr...		Potri.011G145600 [exp]	15.49	0.8516

Compare expression of checked genes

Potri.010G031500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.