Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18700 1790 / 0 RUK, EMB3013 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) AT1G33940 246 / 9e-71 unknown protein AT1G50240 168 / 9e-42 FU FUSED, Protein kinase family protein with ARM repeat domain (.2) AT2G45490 148 / 4e-39 ATAUR3 ataurora3 (.1) AT3G61960 146 / 3e-36 Protein kinase superfamily protein (.1.2) AT3G08720 140 / 6e-35 ATPK2, ATPK19, ATS6K2, S6K2 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) AT3G08730 140 / 8e-35 ATS6K1, ATPK6, ATPK1 P70 RIBOSOMAL S6 KINASE, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 6, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 1, protein-serine kinase 1 (.1) AT2G25090 132 / 2e-32 CIPK16, SnRK3.18 SNF1-RELATED PROTEIN KINASE 3.18, CBL-interacting protein kinase 16 (.1) AT1G45160 136 / 5e-32 Protein kinase superfamily protein (.1.2) AT5G57630 130 / 5e-32 CIPK21, SnRK3.4 SNF1-RELATED PROTEIN KINASE 3.4, CBL-interacting protein kinase 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G195800 [exp] 2449 / 0 AT5G18700 1833 / 0.0 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) Potri.019G052500 [exp] 175 / 5e-44 AT1G50240 1606 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2) Potri.002G181000 [exp] 147 / 3e-36 AT3G61960 592 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G107000 [exp] 145 / 2e-35 AT3G61960 652 / 0.0 Protein kinase superfamily protein (.1.2) Potri.016G138400 [exp] 142 / 2e-35 AT3G08720 639 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.006G080500 [exp] 137 / 2e-35 AT2G45490 470 / 2e-169 ataurora3 (.1) Potri.002G263000 [exp] 146 / 3e-35 AT1G45160 1162 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G109600 [exp] 138 / 3e-34 AT3G08720 637 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.012G127800 [exp] 134 / 1e-31 AT5G62310 1318 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012799 [exp] 1113 / 0 AT5G18700 960 / 0.0 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) Lus10033979 [exp] 519 / 7e-168 AT5G18700 503 / 4e-162 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) Lus10039167 [exp] 174 / 5e-44 AT1G50240 952 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2) Lus10013766 [exp] 173 / 2e-43 AT1G50240 1521 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2) Lus10005135 [exp] 145 / 1e-35 AT3G61960 632 / 0.0 Protein kinase superfamily protein (.1.2) Lus10030182 [exp] 145 / 2e-35 AT3G61960 617 / 0.0 Protein kinase superfamily protein (.1.2) Lus10020580 [exp] 135 / 9e-35 AT2G45490 482 / 3e-174 ataurora3 (.1) Lus10005470 [exp] 140 / 1e-33 AT1G45160 977 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033518 [exp] 130 / 5e-33 AT1G49180 353 / 2e-121 protein kinase family protein (.1.2) Lus10025213 [exp] 134 / 1e-31 AT3G08720 570 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.010G031800.3 pacid=42799424 polypeptide=Potri.010G031800.3.p locus=Potri.010G031800 ID=Potri.010G031800.3.v4.1 annot-version=v4.1 ATGAATCATTTCCATATCTATGAAGCTATTGGCCGTGGCAAATACTCGAGTGTGTATAAAGGTAGAAAGAAGAAGACGATTGAGTATTTCGCTGTTAAGA GTGTCGACAAGTCGCAGAAGAGGAAAGTTCTTCACGAAGTTAGGATGCTTCACTCCTTGGATCATTCAAATGTTTTAAAATTTTACTCTTGGTACGAAAC ACCATCTCACTTGTGGTTGGTTTTGGAATATTGTGTTGGTGGAGATCTCATGACCTTATTGCGACAGGACAGTCAGCTGCCTGAAGACTCAATTCATGAT CTTGCCCGTGACTTAGTTAGAGCTTTGCAGTTCTTACACTCAAAAGGAATCATTTACTGTGATTTAAAACCATCAAATATCCTCTTAGATGAGAATGGAC ATACAAAGCTATGTGATTTTGGATTGGCAAGAAAATTGAGCGATATAACAAAAACTCCTTCGTCCATGTTGCCACAAGCAAAACGCGGAACACCCTGTTA TATGGCTCCTGAACTATTTGAGGATGGGGGTGTCCATTCATATGCATCTGACTTTTGGGCTTTAGGCTGTGTACTGTATGAGTGCTATGCAGGGAGGCCT CCTTTTGTGGGAAGAGAATTCACACAGCTAGTGAAATCCATACTCTCAGATCCGCCACCACCCCTCCCCGGCACTCCAAGCCGTCCCTTTGCCAACTTAA TCAGTTCTCTTCTAGTAAAAGATCCAGCTGAAAGAATCCAGTGGAGCGAGCTTTGTGGACATGCCTTCTGGATGTCTAAAATTTCTCCAGTGCCATTACC TCCTCAAACGGCTTTTGATAATATGATTGAGCTTTGTGCTAAGCCTTGCCTCTCAGAACGTAATGGTGACAGATCTTTAGCAAATAGGACCCCTCCTAAA CATCGTGAAAAAGATGCAAAAGGGACCCCAAAACTGGATGAGAATTCTATGTTAGGATCAAGAGGTCATGAGACACCAGTTAAAGGTACGCCAAGTGGCA GGAAAACTCAAACAAAGGCCTCTGGCAGGGTGGTTGAGGAGAAGCAGAAAGATCCTTCCAATGCTGCCAGGCGTGTTAATCTCTTAAGGTTGTCAAGGAT AGCAAAATCAAATTTACAGAGGGAGAATGAGAAGGAAAACTACAGGAGGCCGTTGCCCAATGGCTCCGAGAATGATTCTGAGGTCAAAACTGAGAACACT GATATGGAGCTTGATTTTAACGAGAACGCTGAAGACGAGACACATGATGAACCTGATGGGTTAGATAACCCAAACAGTACAGCAGAAGAGGTGGTCAACA ACATTCCCCAATCGGAAACCTCTCCTGTGGTAAACACACCTGCCTCAGATGAATCAAGAACAAATGATCAGGATTCATCTTCAGAGCATGTTGATATGGT TTCTACTCCACTCAGTGCTAGTCCTCAGCTCAGGAATCAGAGAAATAAAGAAGGTTTAGTGTCAGCCATTGAGTTTGATTCTTCAAAATCATCCCATGAC CTTTCACAGGTCCTTTGGCATCCATCTGATCTGTCTGTCAGACCTGTAATGCCCAGTAGAAAAGCTGATAAAGTGTCAGATGTTATTCCCTCTCTTCCAT TCGAGGCCTTGCAACCATCTGATTTTGTAAGGATGTCTAGGGAGCAGCTCGATGCACTCACCAATAAGATCATATCCATTTTAAATGGAAACACTAGCAT CGGGGAGAAGTTGAATGTAATTAGATACCTCGAGATGTTGAGTAGCAATGCTGACACAGCCAATATCCTGACAAATGGGCCAATAATGCTCATGCTCGTT AAAATGCTTCGACTGTCCAAGACCCCAGCTTTGCGTGTTCAACTTGCTTCATTGATTGGCTTGTTAATTCGTCATTCAACTTTTATTGAAGACGATTTGG CAAATTCTGGAATTCTGGGCTCACTAACAGATGGCCTTAGAGACAAGCAGGAAAAAGTTAGGAGATTTTCCATGGCTGCTTTAGGTGAGTTGCTGTTTTA TATATCCACCCAGAATGATCAGAGCAAAGATAACAATCCGCCAGAATCTCCATCAAAGGACAGCAGATCCACATTTGGCTGGCAGGTTCCAAACTCATTG ATTTCATTGGTGTCATCCGTTTTACGTAAAGGAGAGGATGATATAGCTCAACTTTATGCATTGAGGACAATTGAAAACATTTGCAGTCAAGGGGGACACT GGCCAGCTCGCTTCACTAGCCAGGATGTGATTAGTAACCTCTGTTATATATATAGAGCTGTAGGGAAACAGGAGAGCATCAGGCTTACTGCAGGTTCATG TTTAGTTCGCCTGACAAGATTTAACCCTCCTAGCATTCAATCAGTCATGGAGAAACTGTCTTTCAAGGATACAGCAACTACCCTAGTCAAGGGCAGCCCA CGTGAGCAGCAAATAAGTTTGAACCTCTTAAACATGGCTATGCTTGGAATTCATATGTTCACAAATATTGGACGGCACCTTTCAAACTTGGCAGAGGATA AGAATTTGGTCCCAAGTCTCGTGTCTCTTACTGAGCAGGGTAGTGACATTTTGAGGGGAAAGACACTTCTTTTCATTGCTCATCTTTGTAAAAATGCTAG GAGGTGTCTACCACACTTTTTTTGCAATCCGAGGTTACTATCTGCCGTGGATAGGGTAGCAAAAGAGAAGGACATCTATCTCCAACAAAGTCTAGATGCA TTTGTGCATGCTGTGTCATCTACTATACCAAGTTTACTTGATATTATAACAGGAGATATTCAGCAAATGATGGGAGGAAGGCGCCATGGTCACAGCTCTG CCATTGCACATCGAATTGCTCCAAAGACCAATGTTCATTTGTTTCCAGTTGTTCTTCATCTTCTTGGAAGCACTTCTTTTAAGTTGAGGGTGGTGAGCCA TCAAGTTATGCAGCAGCTGGCAAATTTAGTCAAAGTCATGGAGACACCATTTCAGGGCAGAGATGACTTCCAAATAACTCTTCTTCGAGTTCTTGAATCT GTTGCAGAGGAGCGCCTTGTCATTCTTGAAAGCCCCAACATTTTCATTTGTGAAATCCTTCCTGGTCTAGCTGTTCTGTACAAGGGCAACAAGGATGGTG ATGCCAGATTTTTGTGCCTTAAAATTCTGTTTGATGTGATGATCATTTTCTTGAATGAACCTTTGGAAGATGACCAAAGATCAGAGGCTTTAAAGTCCAT ATCCATTATTCATTTCCTACCTCTCTACCCTACCTTTATTGAAGATGAAGATCCCATTCCCATGTATGCGCAGAAGCTCCTTGTGATGCTCATTGAGTTT AATTACATAAAAATATCAGACATTCTACATCTGAAGACAGTCACACAGTGCTTTGAGTTTTTGCTCGGTGACCTATCAAGTGCAAATGTCAATAATGTTC AGCTGTGTCTGGCTTTGGCATCAGCTCCTGAAATGGAATCCAAGTTGCTTTCTCAATTAAAAGTGGTTAGGAGGATTGGAAACCTTTTAGAGTTTGTGTA TGCCAAGGACATGGAAGATTTTCTTGAGCCAACTCTTGGCCTGTGTAGGGCATTCCTTCTATGCTCGGTTGGCAGTAAAAGAGGATTTGCCTACAAAAAA GAGCCAGCACTTCTGAATGATTCTTCTGAGGCAAGCACTGCAGTTGATTTACAGCAATGCATAAGAGATGTAATGGACTTTGGTAGCAATGTAGGTGTTT TGCTGGAGTTGAGTAGGTCCTGTGAGGCAAATATTGGAGATATAGCTTCTGAATGTGTGTTGTTGTTGCTGAAGGCAGCTCCAAGGGAAGCCACAACTGG TTTTCTAACTAATCTGCTGAAGGTTAGTACAATCCTCGAGTCTTCGCGCAAGGGTGTTCCTCACTTAGTTTTGCAGCGGATACTACATGCTCTTGCTTAT TCTTGTCAGCAATATTTGTCACATGCGATGATACTATCCATATCCATAAACGAGATTTCAAGGATTGAAGTTATTCTTTTGGAGCTGAAAAATTCAAGCC CCCCTGATTTAGCCAGTGCAGCTTTGCTTGCGGCCTCAGAGTTGCAGCGCCTGCCTCGTTGCATTTGA
AA sequence Show only first row Show all	>Potri.010G031800.3 pacid=42799424 polypeptide=Potri.010G031800.3.p locus=Potri.010G031800 ID=Potri.010G031800.3.v4.1 annot-version=v4.1 MNHFHIYEAIGRGKYSSVYKGRKKKTIEYFAVKSVDKSQKRKVLHEVRMLHSLDHSNVLKFYSWYETPSHLWLVLEYCVGGDLMTLLRQDSQLPEDSIHD LARDLVRALQFLHSKGIIYCDLKPSNILLDENGHTKLCDFGLARKLSDITKTPSSMLPQAKRGTPCYMAPELFEDGGVHSYASDFWALGCVLYECYAGRP PFVGREFTQLVKSILSDPPPPLPGTPSRPFANLISSLLVKDPAERIQWSELCGHAFWMSKISPVPLPPQTAFDNMIELCAKPCLSERNGDRSLANRTPPK HREKDAKGTPKLDENSMLGSRGHETPVKGTPSGRKTQTKASGRVVEEKQKDPSNAARRVNLLRLSRIAKSNLQRENEKENYRRPLPNGSENDSEVKTENT DMELDFNENAEDETHDEPDGLDNPNSTAEEVVNNIPQSETSPVVNTPASDESRTNDQDSSSEHVDMVSTPLSASPQLRNQRNKEGLVSAIEFDSSKSSHD LSQVLWHPSDLSVRPVMPSRKADKVSDVIPSLPFEALQPSDFVRMSREQLDALTNKIISILNGNTSIGEKLNVIRYLEMLSSNADTANILTNGPIMLMLV KMLRLSKTPALRVQLASLIGLLIRHSTFIEDDLANSGILGSLTDGLRDKQEKVRRFSMAALGELLFYISTQNDQSKDNNPPESPSKDSRSTFGWQVPNSL ISLVSSVLRKGEDDIAQLYALRTIENICSQGGHWPARFTSQDVISNLCYIYRAVGKQESIRLTAGSCLVRLTRFNPPSIQSVMEKLSFKDTATTLVKGSP REQQISLNLLNMAMLGIHMFTNIGRHLSNLAEDKNLVPSLVSLTEQGSDILRGKTLLFIAHLCKNARRCLPHFFCNPRLLSAVDRVAKEKDIYLQQSLDA FVHAVSSTIPSLLDIITGDIQQMMGGRRHGHSSAIAHRIAPKTNVHLFPVVLHLLGSTSFKLRVVSHQVMQQLANLVKVMETPFQGRDDFQITLLRVLES VAEERLVILESPNIFICEILPGLAVLYKGNKDGDARFLCLKILFDVMIIFLNEPLEDDQRSEALKSISIIHFLPLYPTFIEDEDPIPMYAQKLLVMLIEF NYIKISDILHLKTVTQCFEFLLGDLSSANVNNVQLCLALASAPEMESKLLSQLKVVRRIGNLLEFVYAKDMEDFLEPTLGLCRAFLLCSVGSKRGFAYKK EPALLNDSSEASTAVDLQQCIRDVMDFGSNVGVLLELSRSCEANIGDIASECVLLLLKAAPREATTGFLTNLLKVSTILESSRKGVPHLVLQRILHALAY SCQQYLSHAMILSISINEISRIEVILLELKNSSPPDLASAALLAASELQRLPRCI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Potri.010G031800 [exp]	0	1
AT1G45207			Remorin family protein (.2)		Potri.002G125200 [exp]	1.00	0.9186
AT1G13170		ORP1D	OSBP(oxysterol binding protein...		Potri.008G182766 [exp]	2.82	0.9098
AT5G19160		TBL11	TRICHOME BIREFRINGENCE-LIKE 11...		Potri.008G203900 [exp]	5.65	0.8953
AT1G05490		CHR31	chromatin remodeling 31 (.1)		Potri.014G050200 [exp]	7.07	0.8617
AT1G50240		FU	FUSED, Protein kinase family p...		Potri.019G052500 [exp]	7.93	0.9077
AT1G73240			unknown protein		Potri.003G213050 [exp]	7.93	0.8946
AT2G45490		ATAUR3	ataurora3 (.1)		Potri.006G080500 [exp]	8.94	0.9070
AT2G23530			Zinc-finger domain of monoamin...		Potri.007G036200 [exp]	9.89	0.8979
AT5G05240			Uncharacterised conserved prot...		Potri.013G091100 [exp]	11.83	0.8859
AT5G52910		ATIM	timeless family protein (.1)		Potri.015G024300 [exp]	13.19	0.9010

Compare expression of checked genes

Potri.010G031800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.