Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ECR1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19180 663 / 0 ECR1 E1 C-terminal related 1 (.1) AT2G21470 155 / 3e-41 EMB2764, ATSAE2, SAE2 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) AT5G06460 103 / 3e-23 ATUBA2 ,UBA 2 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) AT2G30110 87 / 5e-18 ATUBA1, MOS5 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) AT5G55130 67 / 1e-11 SIR1, CNX5 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) AT1G05350 48 / 1e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G45900 44 / 0.0003 ATAPG7, ATG7, APG7, ATATG7 AUTOPHAGY-RELATED 7, AUTOPHAGY 7, ThiF family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G204000 [exp] 829 / 0 AT5G19180 654 / 0.0 E1 C-terminal related 1 (.1) Potri.009G120200 [exp] 155 / 3e-41 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Potri.004G158900 [exp] 154 / 1e-40 AT2G21470 896 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Potri.001G280600 [exp] 96 / 9e-21 AT2G30110 1751 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.009G075800 [exp] 96 / 1e-20 AT2G30110 1762 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.009G075700 [exp] 95 / 2e-20 AT2G30110 1734 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.001G355800 [exp] 74 / 3e-14 AT5G55130 683 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) Potri.015G096300 [exp] 55 / 8e-08 AT1G05350 571 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G055600 [exp] 43 / 0.0004 AT5G45900 986 / 0.0 AUTOPHAGY-RELATED 7, AUTOPHAGY 7, ThiF family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034043 [exp] 769 / 0 AT5G19180 722 / 0.0 E1 C-terminal related 1 (.1) Lus10010507 [exp] 761 / 0 AT5G19180 716 / 0.0 E1 C-terminal related 1 (.1) Lus10017479 [exp] 154 / 1e-40 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Lus10028804 [exp] 136 / 3e-34 AT2G21470 855 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Lus10012507 [exp] 96 / 1e-20 AT2G30110 1706 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Lus10031292 [exp] 84 / 8e-17 AT5G06460 1706 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) Lus10031862 [exp] 83 / 1e-16 AT5G06460 1686 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) Lus10000697 [exp] 77 / 4e-15 AT5G55130 643 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) Lus10022510 [exp] 73 / 1e-13 AT5G55130 651 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) Lus10022666 [exp] 45 / 0.0001 AT2G30110 768 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00899 [poplar] [flax] ThiF ThiF family CL0063 [poplar] [flax] PF08825 [poplar] [flax] E2_bind E2 binding domain
Representative CDS sequence Show only first row Show all	>Potri.010G031900.1 pacid=42797559 polypeptide=Potri.010G031900.1.p locus=Potri.010G031900 ID=Potri.010G031900.1.v4.1 annot-version=v4.1 ATGGCAGACTCTACAGTCCAACAGAGCCGATCGAGAGACCTAGACAAGCTACTTCTCAGACCCGGCAATCTCGTTGCTCCCACCTTCGAATCTGGTGTTC AATTGAGAGATGATCTTCAAGAGTATGCAAGATTATTGGTAATTGGGGCCGGTGGTTTGGGTTGTGAGCTGCTAAAGGACCTAGCTTTATCAGGTTTTAA AAATCTGGAAGTCATTGATATGGACCGTATCGAGGTTACTAATCTCAATCGCCAGTTTCTTTTCAGGCTCGAAGATGTTGGGAAGCCTAAGGCTGAGGTG GCAGCCAAGCGGGTGATGGAAAGAGTTAGTGGCGTGAATATTGTGCCTCATTTTTGCCGAATCGAGGATAAAGAAATTGATTTTTATAAAGATTTTAGTA TTATTGTGCTTGGTCTTGATTCCGTTGAGGCTCGGAGCTATATAAATGCTGTAGCTTGTGGTTTTCTTGAATATGATTCTGATGACAATCCACTAGAAGA AACAGTCAAACCGATGGTAGATGGTGGGACTGAAGGCTTCAAGGGGCATGCCAGGGTTATTATGCCAGGATCCACACCGTGCTTTGAGTGTACTATCTGG CTTTTCCCTCCTCAAGTGAAGTTTCCTCTATGCACCCTTGCAGAAACCCCTAGAACTGCTGCTCATTGTATTGAATATGCTCACTTAATTAAATGGGATG AGGTTCATAGTGGAAAGACTTTTGATCCAGATGATCCAGAACATATGAAATGGGTTTATACCGAGGCTGTCAAGAGGGCTGAACTTTTTGGTATTCAAGG TGTTACATATTCTCTTACTCAGGGTGTTGTGAAAAATATCATACCAGCGATTGCTTCTACCAATGCAATTATATCAGCTGCGTGTACTTTGGAAACCTTA AAGCTTGCCTCGGGATGCAGCAAAACTCTAAGCAACTATCTGACGTATAATGGCGTGGAAGGTCTACACATCAAAGTGACTGAATTTGTGAGGGACAAGG ATTGTCTTGTTTGTGGTCCAGGTGTTCTTATTGAGCTGGACACTTCAGTTACTTTACAAAAGTTTATTGATATGCTTGAAGAACATCCTAAGCTGCTCCT GTCAAAAGCTAGTGTTAGACACCAAACAATGAATTTGTACATGCAAGCGCCTCCAGTTCTGGAAGAGATGACTCGATCGAACCTAGGCTTACCACTTTTT GAGCTTATGGGTAAAGTTTCAAAGGACATTGTTCTCGTGACTGGTACAAGCAGCAAGGATGACAAGAAAACTTCATGTCTGAGAAAATTATGCCTTGTTT TCAAGGGACAGGATGCAGTTACAGATATGGATATGGCTGTTGGAGCGTAA
AA sequence Show only first row Show all	>Potri.010G031900.1 pacid=42797559 polypeptide=Potri.010G031900.1.p locus=Potri.010G031900 ID=Potri.010G031900.1.v4.1 annot-version=v4.1 MADSTVQQSRSRDLDKLLLRPGNLVAPTFESGVQLRDDLQEYARLLVIGAGGLGCELLKDLALSGFKNLEVIDMDRIEVTNLNRQFLFRLEDVGKPKAEV AAKRVMERVSGVNIVPHFCRIEDKEIDFYKDFSIIVLGLDSVEARSYINAVACGFLEYDSDDNPLEETVKPMVDGGTEGFKGHARVIMPGSTPCFECTIW LFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKTFDPDDPEHMKWVYTEAVKRAELFGIQGVTYSLTQGVVKNIIPAIASTNAIISAACTLETL KLASGCSKTLSNYLTYNGVEGLHIKVTEFVRDKDCLVCGPGVLIELDTSVTLQKFIDMLEEHPKLLLSKASVRHQTMNLYMQAPPVLEEMTRSNLGLPLF ELMGKVSKDIVLVTGTSSKDDKKTSCLRKLCLVFKGQDAVTDMDMAVGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19180		ECR1	E1 C-terminal related 1 (.1)		Potri.010G031900 [exp]	0	1	ECR1.2
AT2G30000			PHF5-like protein (.1)		Potri.001G277700 [exp]	2.00	0.8398
AT5G60230		ATSEN2, SEN2	splicing endonuclease 2 (.1.2)		Potri.009G131500 [exp]	3.46	0.8245	Pt-SEN1.2
AT3G53340	CCAAT	NF-YB10	"nuclear factor Y, subunit B10...		Potri.016G085000 [exp]	3.74	0.7939
					Potri.010G139550 [exp]	5.47	0.8270
AT1G65032			unknown protein		Potri.005G094100 [exp]	6.32	0.8090
AT3G45770			Polyketide synthase, enoylredu...		Potri.001G233300 [exp]	11.40	0.7650
AT4G25180			RNA polymerase III RPC4 (.1)		Potri.003G107300 [exp]	12.24	0.7983
AT1G20950			Phosphofructokinase family pro...		Potri.006G024500 [exp]	13.41	0.8000
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Potri.010G162600 [exp]	13.41	0.7814
AT1G05785			Got1/Sft2-like vescicle transp...		Potri.014G151000 [exp]	14.49	0.7899

Compare expression of checked genes

Potri.010G031900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.