Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10370 303 / 2e-105 GST30B, ATGSTU17, ERD9 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) AT1G10360 294 / 8e-102 GST29, ATGSTU18 GLUTATHIONE S-TRANSFERASE 29, glutathione S-transferase TAU 18 (.1) AT1G59700 265 / 4e-90 ATGSTU16 glutathione S-transferase TAU 16 (.1) AT1G69930 254 / 1e-85 ATGSTU11 glutathione S-transferase TAU 11 (.1) AT1G59670 249 / 5e-84 ATGSTU15 glutathione S-transferase TAU 15 (.1) AT1G27130 231 / 6e-77 GST12, ATGSTU13 GLUTATHIONE S-TRANSFERASE 12, glutathione S-transferase tau 13 (.1) AT1G27140 225 / 3e-74 GST13, ATGSTU14 GLUTATHIONE S-TRANSFERASE 13, glutathione S-transferase tau 14 (.1) AT1G69920 216 / 2e-70 ATGSTU12 ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 12, glutathione S-transferase TAU 12 (.1) AT3G09270 179 / 1e-56 ATGSTU8 glutathione S-transferase TAU 8 (.1) AT2G29420 177 / 1e-55 GST25, ATGSTU7 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G035500 [exp] 452 / 3e-164 AT1G10370 301 / 2e-104 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Potri.008G175100 [exp] 193 / 5e-62 AT2G29420 169 / 1e-52 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061700 [exp] 184 / 1e-58 AT2G29420 172 / 1e-53 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G060900 [exp] 180 / 8e-57 AT2G29420 175 / 7e-55 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061200 [exp] 177 / 6e-56 AT3G09270 202 / 8e-66 glutathione S-transferase TAU 8 (.1) Potri.011G140800 [exp] 177 / 1e-55 AT1G78380 318 / 1e-111 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.010G061100 [exp] 177 / 1e-55 AT2G29490 172 / 5e-54 GLUTATHIONE S-TRANSFERASE 19, glutathione S-transferase TAU 1 (.1) Potri.002G254000 [exp] 177 / 1e-55 AT2G29420 167 / 1e-51 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.012G052200 [exp] 175 / 6e-55 AT2G29420 220 / 2e-72 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030805 [exp] 323 / 7e-113 AT1G10370 308 / 4e-107 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Lus10036688 [exp] 319 / 2e-111 AT1G10370 281 / 1e-96 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Lus10037234 [exp] 317 / 2e-110 AT1G10370 285 / 2e-98 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Lus10030806 [exp] 281 / 1e-96 AT1G10370 290 / 4e-100 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Lus10013282 [exp] 225 / 8e-75 AT1G10370 229 / 2e-76 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Lus10021102 [exp] 199 / 2e-64 AT3G09270 245 / 2e-82 glutathione S-transferase TAU 8 (.1) Lus10016471 [exp] 186 / 5e-59 AT2G29420 234 / 8e-78 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10042468 [exp] 184 / 3e-58 AT1G78380 306 / 6e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10021103 [exp] 182 / 8e-58 AT3G09270 250 / 1e-84 glutathione S-transferase TAU 8 (.1) Lus10016469 [exp] 182 / 2e-57 AT2G29420 230 / 2e-76 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0497 [poplar] [flax] GST_C PF00043 [poplar] [flax] GST_C Glutathione S-transferase, C-terminal domain CL0172 [poplar] [flax] Thioredoxin PF13417 [poplar] [flax] GST_N_3 Glutathione S-transferase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.010G032800.1 pacid=42798712 polypeptide=Potri.010G032800.1.p locus=Potri.010G032800 ID=Potri.010G032800.1.v4.1 annot-version=v4.1 ATGGCTAAGAGTGATGTGAAGCTTATAGGGGCATGGCCGAGCCCTTTTGTGATGAGGCCAAGAATTGCCCTTAATATTAAATCTGCGGGGTATGAGTTTC TTGAGGAAACACTGGGATCCAAAAGCCAGCTTCTTCTTGAATCAAACCCTGTCCATAAGAAAATCCCAGTTCTGATTCATGATGGCAAGCCCATTTGTGA ATCTCTTGTGATAGTGGAGTACATTGATGAGGTTTGGTCTTCTGGACCTACCATCCTCCCCTCCGATCCTTATGATCGTGCCCTTGCTCGGTTTTGGGCT GCCTATCTCGATGAGAAGTGGTTTCCTACGATGAGAAGCATTGCAACAGCTAAAGAAGAGGAGGCTCGAAAGGCGTTGATAGAGCAAGCAGGAGAAGGGG TGATGATGCTGGAGGATGCATTTAGCAGGTGTAGCAAAGGGAAGGGTTTCTTTGGAGGAGATCAGATCGGGTACCTTGACATTGCATTTGGTTCCTTTTT GGGGTGGTTGAGAGCCATAGAGAAGATGAATGGAGTGAAGCTGATTGATGAAACTAAGACTCCTAGCCTGTTGAAATGGGCAACTAGTTTTTCTTCACAT CCTGCTGTGAAGGATGTCCTTCCAGAGACACAGAAGCTTGTTGAGTTTGCCAAGGTTCTGGCCAAATTCAAAGCACCCAGCTCGAACTCCTAA
AA sequence Show only first row Show all	>Potri.010G032800.1 pacid=42798712 polypeptide=Potri.010G032800.1.p locus=Potri.010G032800 ID=Potri.010G032800.1.v4.1 annot-version=v4.1 MAKSDVKLIGAWPSPFVMRPRIALNIKSAGYEFLEETLGSKSQLLLESNPVHKKIPVLIHDGKPICESLVIVEYIDEVWSSGPTILPSDPYDRALARFWA AYLDEKWFPTMRSIATAKEEEARKALIEQAGEGVMMLEDAFSRCSKGKGFFGGDQIGYLDIAFGSFLGWLRAIEKMNGVKLIDETKTPSLLKWATSFSSH PAVKDVLPETQKLVEFAKVLAKFKAPSSNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Potri.010G032800 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.019G001200 [exp]	4.12	0.9935
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.009G116800 [exp]	4.47	0.9905
AT1G65450			HXXXD-type acyl-transferase fa...		Potri.010G180000 [exp]	5.29	0.9918
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.003G019900 [exp]	5.91	0.9873
AT1G55230			Family of unknown function (DU...		Potri.001G009000 [exp]	6.92	0.9869
AT1G56580		SVB	SMALLER WITH VARIABLE BRANCHES...		Potri.013G007000 [exp]	7.21	0.9920
AT2G38540		ATLTP1, LP1	ARABIDOPSIS THALIANA LIPID TRA...		Potri.004G086600 [exp]	8.12	0.9836	Pt-MALD3.1
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Potri.018G099400 [exp]	8.48	0.9867
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Potri.010G035500 [exp]	8.77	0.9629	Pt-GST30.1
AT2G47240		CER8, LACS1	LONG-CHAIN ACYL-COA SYNTHASE 1...		Potri.002G192400 [exp]	9.16	0.9837

Compare expression of checked genes

Potri.010G032800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.