Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23610 248 / 5e-85 DSPTP1 dual specificity protein phosphatase 1 (.1.2.3) AT3G06110 199 / 8e-66 DSPTP1B, MKP2, ATMKP2 DUAL-SPECIFICITY PROTEIN PHOSPHATASE 1B, ARABIDOPSIS MAPK PHOSPHATASE 2, MAPK phosphatase 2 (.1.2.3) AT5G23720 100 / 6e-25 PHS1 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) AT2G04550 90 / 3e-22 DSPTP1E, IBR5 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3) AT3G55270 89 / 7e-21 MKP1, ATMKP1 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) AT5G56610 52 / 2e-08 Phosphotyrosine protein phosphatases superfamily protein (.1.2) AT2G35680 47 / 2e-06 Phosphotyrosine protein phosphatases superfamily protein (.1) AT3G10940 42 / 0.0001 LSF2 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G105800 [exp] 100 / 1e-24 AT5G23720 1006 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Potri.015G105000 [exp] 99 / 4e-24 AT5G23720 1096 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Potri.008G049900 [exp] 93 / 2e-22 AT3G55270 710 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Potri.010G210900 [exp] 93 / 4e-22 AT3G55270 715 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Potri.014G160500 [exp] 84 / 1e-19 AT2G04550 333 / 6e-116 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3) Potri.006G040300 [exp] 79 / 1e-17 AT4G18593 148 / 5e-44 dual specificity protein phosphatase-related (.1) Potri.016G035700 [exp] 77 / 6e-17 AT4G18593 149 / 3e-44 dual specificity protein phosphatase-related (.1) Potri.014G045500 [exp] 56 / 2e-09 AT2G35680 360 / 2e-124 Phosphotyrosine protein phosphatases superfamily protein (.1) Potri.002G136700 [exp] 54 / 9e-09 AT2G35680 350 / 1e-120 Phosphotyrosine protein phosphatases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021940 [exp] 266 / 2e-92 AT3G23610 248 / 1e-84 dual specificity protein phosphatase 1 (.1.2.3) Lus10041227 [exp] 255 / 1e-87 AT3G23610 237 / 4e-80 dual specificity protein phosphatase 1 (.1.2.3) Lus10034033 [exp] 173 / 3e-56 AT3G23610 168 / 5e-54 dual specificity protein phosphatase 1 (.1.2.3) Lus10036877 [exp] 99 / 3e-24 AT3G23610 511 / 3e-171 dual specificity protein phosphatase 1 (.1.2.3) Lus10006229 [exp] 99 / 3e-24 AT3G23610 512 / 1e-171 dual specificity protein phosphatase 1 (.1.2.3) Lus10032545 [exp] 96 / 4e-23 AT5G23720 1120 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Lus10043195 [exp] 94 / 2e-22 AT5G23720 1047 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Lus10030324 [exp] 89 / 9e-21 AT3G55270 806 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Lus10003291 [exp] 88 / 1e-20 AT3G55270 800 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Lus10000921 [exp] 86 / 2e-20 AT2G04550 322 / 1e-111 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [poplar] [flax] Phosphatase PF00782 [poplar] [flax] DSPc Dual specificity phosphatase, catalytic domain
Representative CDS sequence Show only first row Show all	>Potri.010G033000.4 pacid=42797713 polypeptide=Potri.010G033000.4.p locus=Potri.010G033000 ID=Potri.010G033000.4.v4.1 annot-version=v4.1 ATGAATAATCAGATTGATGATTCGATCAAGAATCAAGAAGCAGCACTTTTGCGAGTTATAAATGTAGCTAGATTCTTCAAGGGAGATGATGTTCCATGCC AGATTGAAGAGGGCCTATTCTTGGGTTCTGTGGGTGCTGCTACTAACAAGGATGCACTTAATAGCAAGAATATTACACACATCTTAACTGTAGCTAATTC ATTGCCTCCCTCTTTTCCAAATGATTTTGTATATGAAGTCATTGGAGTCACGGATAGAAATGACACCAATTTAAGGCAGTACTTCGACAAGTGTTTCAAT TTTATTGACGAAGCCAAGAGGCAGGGAGGTGGTGTTTTGGTCCATTGCTTTGTTGGAAGGTCCCGAAGTGTGACTATTGTTGTTGCTTATTTGATGAAAA GGCATGGAATGAGACTATCTGAAGCTTTGGCACATGTGAAGAGTAAAAGGCCTCAGGCTGGACCTAATTCTGGTTTCATCTCACAGCTTCAAGACTTTGA GAAATCTCTTCAAGGTATCTCTTCATAA
AA sequence Show only first row Show all	>Potri.010G033000.4 pacid=42797713 polypeptide=Potri.010G033000.4.p locus=Potri.010G033000 ID=Potri.010G033000.4.v4.1 annot-version=v4.1 MNNQIDDSIKNQEAALLRVINVARFFKGDDVPCQIEEGLFLGSVGAATNKDALNSKNITHILTVANSLPPSFPNDFVYEVIGVTDRNDTNLRQYFDKCFN FIDEAKRQGGGVLVHCFVGRSRSVTIVVAYLMKRHGMRLSEALAHVKSKRPQAGPNSGFISQLQDFEKSLQGISS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23610		DSPTP1	dual specificity protein phosp...		Potri.010G033000 [exp]	0	1
AT5G05800			unknown protein		Potri.008G196901 [exp]	1.00	0.9570
AT4G28088			Low temperature and salt respo...		Potri.006G182500 [exp]	2.00	0.9443
AT4G10050			esterase/lipase/thioesterase f...		Potri.013G099900 [exp]	3.16	0.9336
AT3G07950			rhomboid protein-related (.1)		Potri.010G220900 [exp]	3.46	0.9485
AT1G47830			SNARE-like superfamily protein...		Potri.002G022900 [exp]	6.00	0.9396
AT5G52210		ATGB1, ATARLB1	GTP-binding protein 1 (.1.2)		Potri.012G138500 [exp]	6.00	0.9276
AT1G03030			P-loop containing nucleoside t...		Potri.005G218700 [exp]	6.63	0.9121
AT3G18670			Ankyrin repeat family protein ...		Potri.008G022900 [exp]	6.63	0.9332
AT1G74920		ALDH10A8	aldehyde dehydrogenase 10A8 (....		Potri.012G075600 [exp]	7.07	0.9241	Pt-ALDH10.1
AT2G32580			Protein of unknown function (D...		Potri.014G155600 [exp]	8.36	0.9379

Compare expression of checked genes

Potri.010G033000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.