Plant FIBer expression Database

Potri.010G033400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G06035 215 / 2e-71 Glycoprotein membrane precursor GPI-anchored (.1)
AT5G19250 209 / 7e-69 Glycoprotein membrane precursor GPI-anchored (.1)
AT1G54860 150 / 7e-46 Glycoprotein membrane precursor GPI-anchored (.1)
AT5G19240 145 / 1e-43 Glycoprotein membrane precursor GPI-anchored (.1)
AT5G19230 128 / 2e-37 Glycoprotein membrane precursor GPI-anchored (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G195000
[exp]
295 / 1e-102 AT3G06035 231 / 2e-77 Glycoprotein membrane precursor GPI-anchored (.1)
Potri.005G034400
[exp]
150 / 3e-46 AT1G54860 167 / 6e-53 Glycoprotein membrane precursor GPI-anchored (.1)
Potri.013G023801
[exp]
114 / 2e-32 AT1G54860 102 / 4e-28 Glycoprotein membrane precursor GPI-anchored (.1)
Potri.005G034200
[exp]
96 / 7e-25 AT1G54860 110 / 2e-30 Glycoprotein membrane precursor GPI-anchored (.1)
Potri.005G034300
[exp]
86 / 9e-21 AT1G54860 99 / 5e-26 Glycoprotein membrane precursor GPI-anchored (.1)
Potri.013G023701
[exp]
63 / 9e-13 AT1G54860 62 / 8e-13 Glycoprotein membrane precursor GPI-anchored (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034054
[exp]
243 / 3e-82 AT3G06035 220 / 2e-73 Glycoprotein membrane precursor GPI-anchored (.1)
Lus10010516
[exp]
239 / 1e-80 AT3G06035 226 / 9e-76 Glycoprotein membrane precursor GPI-anchored (.1)
Lus10004470
[exp]
143 / 5e-43 AT1G54860 190 / 2e-61 Glycoprotein membrane precursor GPI-anchored (.1)
Lus10029938
[exp]
142 / 6e-39 AT1G08960 640 / 0.0 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1)
PFAM info
Representative CDS sequence
>Potri.010G033400.1 pacid=42797105 polypeptide=Potri.010G033400.1.p locus=Potri.010G033400 ID=Potri.010G033400.1.v4.1 annot-version=v4.1
ATGGCATCTTCAAGATTTTCTCTCCTCTTCCCATTCTTTGTTTCCTTCCTTCTTTGCATCATCTCTCACCCTGTCCTTTGTGACGATCAGGAGGATGGCC
TTCTTCAAAGCATTAACAACTATAGGACATCCTTGAATTTGACTGCCCTCACAAAAAATGATAATGCAGAGTGCCTTGCTGGGGAATTAGCTGACCAGTT
TAAGGATCAACCCTGTACATATGCCACGGGCTCCAACACAGTACCAGGCACTGAAACGCAGTTCCCCAATTACCCAAGCCTTCTAGCCAAATGCCATCTG
AATGTATCCAACACAAGGGATGGAGCTTTGATGCCCGCTTGTGTTCCCAACCTGGATCCGAGTCTTGTGCTAACTAACTTCACGCAGACTCAATACTCGG
GTAGCCTTGATGATGCTAAGTTTACGGGAGCTGGGATAGGTTCTGATGGTAACTGGATTGTTGTTGTTCTGACCACAAGCACACCTGAGGGAAGCTTTGT
GACTTCTAAGGCAGACAGTTCGGATTACAATGCAGCCAATTTGACAGACAAGAATATCGGTCTAATCTACTTGCTGTTTTTGCTGACGGCTTCTCTCTTC
TTGTTGTAA
AA sequence
>Potri.010G033400.1 pacid=42797105 polypeptide=Potri.010G033400.1.p locus=Potri.010G033400 ID=Potri.010G033400.1.v4.1 annot-version=v4.1
MASSRFSLLFPFFVSFLLCIISHPVLCDDQEDGLLQSINNYRTSLNLTALTKNDNAECLAGELADQFKDQPCTYATGSNTVPGTETQFPNYPSLLAKCHL
NVSNTRDGALMPACVPNLDPSLVLTNFTQTQYSGSLDDAKFTGAGIGSDGNWIVVVLTTSTPEGSFVTSKADSSDYNAANLTDKNIGLIYLLFLLTASLF
LL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G06035 Glycoprotein membrane precurso... Potri.010G033400
[exp]
0 1
AT1G12000 Phosphofructokinase family pro... Potri.011G015600
[exp]
1.41 0.9746
AT1G10630 ATARFA1F ADP-ribosylation factor A1F (.... Potri.008G100000
[exp]
1.41 0.9694 ARF1.3
AT5G27490 Integral membrane Yip1 family ... Potri.005G033900
[exp]
2.00 0.9637
AT5G66060 2-oxoglutarate (2OG) and Fe(II... Potri.005G108000
[exp]
2.64 0.9601
AT5G11640 Thioredoxin superfamily protei... Potri.006G237600
[exp]
3.46 0.9602
AT5G37310 Endomembrane protein 70 protei... Potri.004G075450
[exp]
3.46 0.9671
AT4G12650 Endomembrane protein 70 protei... Potri.002G217300
[exp]
4.89 0.9591
AT1G14830 DRP1C, ADL5, AD... DYNAMIN RELATED PROTEIN 1C, AR... Potri.010G105900
[exp]
5.00 0.9636 Pt-ADL5.1
AT4G17890 UBP20, AGD8 ARF-GAP domain 8 (.1.2) Potri.001G142100
[exp]
5.09 0.9574 UBP20.2
AT5G03170 ATFLA11, FLA11,... ARABIDOPSIS FASCICLIN-LIKE ARA... Potri.006G129200
[exp]
5.29 0.9573 Pt-FLA11.1

Potri.010G033400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.