Plant FIBer expression Database

Potri.010G033900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G17900 843 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G194566
[exp]
412 / 1e-138 AT3G17900 229 / 6e-69 unknown protein
Potri.008G194632
[exp]
253 / 7e-79 AT3G17900 195 / 5e-58 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037215
[exp]
889 / 0 AT3G17900 825 / 0.0 unknown protein
Lus10036712
[exp]
886 / 0 AT3G17900 820 / 0.0 unknown protein
Lus10030797
[exp]
765 / 0 AT3G17900 731 / 0.0 unknown protein
Lus10013273
[exp]
763 / 0 AT3G17900 696 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Potri.010G033900.3 pacid=42796859 polypeptide=Potri.010G033900.3.p locus=Potri.010G033900 ID=Potri.010G033900.3.v4.1 annot-version=v4.1
ATGAATTTTCTGTTGCGCCCTACCACTCACCAAGTAATCAAAGAACAGGTTTCTGCTCCTGTTCCTGCTCTTGAATCTCCTTCTCCAGCTGTGACTTTGG
AGGGTCTTATAGCTGAAGATTCATTCCCTCAATCTGAAGTTCGTGATATGGGTATTGGTGGTGAAAATGGATCTGTTGCTGCTACAAAGAATGATTCATC
ACTTGTCTTGGAGAACCACTCTGATGTTTCTGAAGAAGAAGGATGGATCGTCATCCCATTTGGGGAACTTCCTGATGACTGGAAGAATGCACCAGATATA
CATTCATTACGCTCCCTGGATCGGTCATTTGTTTTTCCTGGTGAACAAGTTCATATTCTGGCATGTTTATCAGCATACAAGCAGGATACAGAAATTATTA
CTCCATTTAAAGTTGCTGCAGTGATGTCTAAAAATGGAATAGGGCAAAGCCCTGAGAAACAAAATGGAAATTTGAAAGATGGAGGTAGTTCGGTTTCTGC
ACAAGGGGAAGTGAGTTCTGATAGTCAAGTAATAGGCCTTAATGGCAATGGCGCATCAAAACAGAAGACTGATCCACAAGGGGATATTTCTGCTAGCAAA
TCCTTTCTCAGAATGGAGGATTACAAAAGACAAACTGAAATGTTATTGCAAAGATTTAAGAACTCCCATTTTTTTGTTAGGATTGCAGAGTCGGGTGAAC
CACTTTGGTCAAGAAAAAGTGCACTTGATCAAGAATACTCTGAGGTGGATAGTCAGAACAAACCACAAAGAACCAAGAAAACTGCAGATAACACGTTCCA
TCTTAGTGCTCTTATTGATAGAGGAAATTTTGATGCTAATGTCTCTGGTGGTGCCGCAAGGAATGGTGTTAGCTGTTGCTCTCTTTCTAATGGAGATATA
GTGGTGCTTTTACAGGTTAATGTTGGTGTTAATTTTTTCAGAGACCCTGTCATTGAGATTCTTCAGTTTGAGAAATATCAGGAGAGAAATCGGTTTCCTG
AGAACCAAGACAACTTAAATTACAGTAATTATGACCCATGTGGAGAACTATTAAAATGGTTGCTTCCTGTGGATAACACCTTATCTTCTCCCGCTCGTTC
TTTGCCTCCTCCTCAGTTAGGTTCCAATTCAGGATTCGGTGGTGCATCACAGAAGTCTTCCTCATCTGGTTCTCAGCTCTTCTCTCATTTTAGAAGTTAC
TCCATGTCATCACTGCCTCAAAATTCTGCTCCACCTCCACAACCTGTTAAAGCCCAAAGCTCTAAGCCGAACTTTGACCTTGAAGATTGGGATCAGTACT
CATCTCAGAAGTTATGGAAAAGTCAAAAACCTGCGGATGAAGAGCTTTTATCTATCCGAGGTGTATCATTAGAGAGAGAGAGGTTTTCTGTTCGCTGTGG
GTTGGAAGGCATCTACATTCCAGGAAGAAGATGGTTGAGGAAACTTGAAATAATTCAACCTGTAGAAATTCATTCTTTTGCTGCTGACTGCAATACAGAT
GACCTTCTTTGTGTTCAGATTAAGAACGTATCTCCAGCAATTACACCGGATATTGTGGTATACATAGATACTATAACTATTGTTTTTGAGGAAGCTTCAA
AGAGTGGACTTCCCTCATCATTACCAATTGCATGTATTGAAGCTGGAAATGATCACAGTTTGCCAAATCTAGCCCTCAGGAGAGGTGAGGAGCACTCATT
CATTCTCAAACCAGCATCCTTTGTGAAGGATTCCAAAGTTCACAGAGAAAGACTATCCCCATCATTAAGTCTGCATCTTGTACCAAATACTGTGGAAGGC
AGGAGTGCATTGAATGTTGACCAGTATGCAATTATTGTATCTTGTCGCAGCAACTACACTGAGTCAAGACTCTTTTTTAAGCAGCCAACTAGTTGGCGAC
CGCGTAACTCAAGGGATCTTTTGATCTCTGTTGCATCTGAAATGTCAGGACAATCTTCTGGACCCAATGAGAGAGTCTCCCAGCTTCCAGTTCAGGTTTT
AGCTTTACGGGCTTCAAATTTGACATCTGAAGATCTAACTCTGACGGTTCTGGCTCCTGCCTCATTTACTTCACCTCCATCAGTGGGGTCCTTGAGTTCT
TCACCGACAACACCAATGAGCTCATTTGTTGGTTTGCCCGAGTCTACAGGTATAATAACTGGTGAGAAATATTGCTCTGCAGTGCAGGCACTGACCTCTG
TGACTACCACTTCAGAAATTATCGAACAGTCTTCTCCCATATCTGATGTTATTTCGAGTACAGGCTTGGGTTGTACACATCTGTGGTTGCAGAGCAGAGT
TCCATTAGGATGCGTTCCTGCTCAATCTACGGCTACTATTAAGCTTGAGCTACTTCCCTTGACTGATGGGATAATTTCCCTGGACACTTTACAGATAGAT
GTTAAGGAGAAAGGTCTAACCTATATTCCCGAGAACTCTCTAAAGATAAATGCAACTTCCAGCATTTCCACGGGGATCATCTAG
AA sequence
>Potri.010G033900.3 pacid=42796859 polypeptide=Potri.010G033900.3.p locus=Potri.010G033900 ID=Potri.010G033900.3.v4.1 annot-version=v4.1
MNFLLRPTTHQVIKEQVSAPVPALESPSPAVTLEGLIAEDSFPQSEVRDMGIGGENGSVAATKNDSSLVLENHSDVSEEEGWIVIPFGELPDDWKNAPDI
HSLRSLDRSFVFPGEQVHILACLSAYKQDTEIITPFKVAAVMSKNGIGQSPEKQNGNLKDGGSSVSAQGEVSSDSQVIGLNGNGASKQKTDPQGDISASK
SFLRMEDYKRQTEMLLQRFKNSHFFVRIAESGEPLWSRKSALDQEYSEVDSQNKPQRTKKTADNTFHLSALIDRGNFDANVSGGAARNGVSCCSLSNGDI
VVLLQVNVGVNFFRDPVIEILQFEKYQERNRFPENQDNLNYSNYDPCGELLKWLLPVDNTLSSPARSLPPPQLGSNSGFGGASQKSSSSGSQLFSHFRSY
SMSSLPQNSAPPPQPVKAQSSKPNFDLEDWDQYSSQKLWKSQKPADEELLSIRGVSLERERFSVRCGLEGIYIPGRRWLRKLEIIQPVEIHSFAADCNTD
DLLCVQIKNVSPAITPDIVVYIDTITIVFEEASKSGLPSSLPIACIEAGNDHSLPNLALRRGEEHSFILKPASFVKDSKVHRERLSPSLSLHLVPNTVEG
RSALNVDQYAIIVSCRSNYTESRLFFKQPTSWRPRNSRDLLISVASEMSGQSSGPNERVSQLPVQVLALRASNLTSEDLTLTVLAPASFTSPPSVGSLSS
SPTTPMSSFVGLPESTGIITGEKYCSAVQALTSVTTTSEIIEQSSPISDVISSTGLGCTHLWLQSRVPLGCVPAQSTATIKLELLPLTDGIISLDTLQID
VKEKGLTYIPENSLKINATSSISTGII

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G17900 unknown protein Potri.010G033900
[exp]
0 1
AT4G02570 AXR6, ATCUL1 AUXIN RESISTANT 6, cullin 1 (.... Potri.008G217300
[exp]
1.73 0.7817 Pt-CUL1.4
AT5G08560 transducin family protein / WD... Potri.005G206600
[exp]
4.69 0.6793
AT1G20760 Calcium-binding EF hand family... Potri.002G008600
[exp]
8.24 0.7494
AT3G63460 EMB2221 transducin family protein / WD... Potri.009G055400
[exp]
12.24 0.7514
AT5G11040 AtTRS120 TRS120 (.1) Potri.018G022500
[exp]
12.88 0.7680
AT3G61600 ATPOB1 POZ/BTB containin G-protein 1 ... Potri.001G096100
[exp]
14.89 0.6567
AT5G16280 Tetratricopeptide repeat (TPR)... Potri.016G068800
[exp]
15.81 0.7340
AT1G73930 unknown protein Potri.012G060200
[exp]
19.44 0.7231
AT5G05980 ATDFB, FPGS1 folylpolyglutamate synthetase ... Potri.010G197800
[exp]
24.59 0.6350 FPGS3,Pt-ATDFB.2
AT1G56460 HIT zinc finger ;PAPA-1-like c... Potri.005G014000
[exp]
25.92 0.6758

Potri.010G033900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.