Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14430 653 / 0 glyoxal oxidase-related protein (.1) AT3G57620 558 / 0 glyoxal oxidase-related protein (.1) AT1G75620 499 / 2e-172 glyoxal oxidase-related protein (.1) AT1G19900 497 / 2e-171 glyoxal oxidase-related protein (.1) AT3G53950 434 / 1e-146 glyoxal oxidase-related protein (.1) AT5G19580 412 / 2e-137 glyoxal oxidase-related protein (.1) AT1G67290 405 / 1e-134 GLOX1 glyoxal oxidase 1, glyoxal oxidase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G027000 [exp] 549 / 0 AT1G75620 708 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G235500 [exp] 540 / 0 AT1G19900 699 / 0.0 glyoxal oxidase-related protein (.1) Potri.013G034900 [exp] 532 / 0 AT3G57620 670 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G047701 [exp] 531 / 0 AT3G57620 677 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G235600 [exp] 524 / 0 AT1G19900 692 / 0.0 glyoxal oxidase-related protein (.1) Potri.001G083600 [exp] 491 / 3e-169 AT1G14430 520 / 2e-180 glyoxal oxidase-related protein (.1) Potri.016G103400 [exp] 426 / 3e-144 AT3G53950 801 / 0.0 glyoxal oxidase-related protein (.1) Potri.006G160800 [exp] 427 / 3e-143 AT5G19580 668 / 0.0 glyoxal oxidase-related protein (.1) Potri.018G084200 [exp] 417 / 2e-139 AT5G19580 655 / 0.0 glyoxal oxidase-related protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030798 [exp] 678 / 0 AT1G14430 623 / 0.0 glyoxal oxidase-related protein (.1) Lus10015949 [exp] 529 / 0 AT3G57620 654 / 0.0 glyoxal oxidase-related protein (.1) Lus10024312 [exp] 508 / 4e-176 AT1G75620 656 / 0.0 glyoxal oxidase-related protein (.1) Lus10024342 [exp] 421 / 6e-142 AT3G53950 841 / 0.0 glyoxal oxidase-related protein (.1) Lus10011111 [exp] 398 / 5e-132 AT5G19580 655 / 0.0 glyoxal oxidase-related protein (.1) Lus10011109 [exp] 388 / 7e-129 AT5G19580 622 / 0.0 glyoxal oxidase-related protein (.1) Lus10043231 [exp] 390 / 6e-128 AT5G19580 647 / 0.0 glyoxal oxidase-related protein (.1) Lus10011110 [exp] 388 / 1e-127 AT5G19580 597 / 0.0 glyoxal oxidase-related protein (.1) Lus10043230 [exp] 384 / 1e-125 AT5G19580 620 / 0.0 glyoxal oxidase-related protein (.1) Lus10012979 [exp] 386 / 2e-125 AT5G19580 619 / 0.0 glyoxal oxidase-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07250 [poplar] [flax] Glyoxal_oxid_N Glyoxal oxidase N-terminus CL0159 [poplar] [flax] E-set PF09118 [poplar] [flax] DUF1929 Domain of unknown function (DUF1929)
Representative CDS sequence Show only first row Show all	>Potri.010G034200.1 pacid=42797090 polypeptide=Potri.010G034200.1.p locus=Potri.010G034200 ID=Potri.010G034200.1.v4.1 annot-version=v4.1 ATGGCAATCAAGAAACATCCTTTTTTCATCTTCCTCTTTGTTTTCTATATCTTCATGAGTTTTTCACCAGAAATTGCCCATGCTGGATCGTATTTGTCCA CCATAACAGGGGGCAACTGGGTGGTTCTCCAAGAAAGCATAGGCATCTCAGCCATGCACATGCAAGTCCTTAGAAACAACAAGGTCATCATGTTTGATCG CACAGACTTTGGCCGCTCCAATCTCTCTCTTCCAGACGGCAAGTGCCGGTACAAAGACGAAGCGGTTAAGCCTAAAGATTGCACTGCTCACGCCGTTCTT TATGACATCGCTTCCAACACCTTCCGCCCTCTCATGGTCCAAACTGACACTTGGTGCTCTTCTGGTTCCCTCGATTCCTCCGGCAATCTCATCCAAACCG GCGGTTACAAAGCAGGCGAGGCCGTAATACGCTCTTTCACCCCCTGCGATGACGATTCTTGTGATTGGGTGGAGCTGTCAAACCAGGTTCTTTGGAACCG GAGATGGTATGCCAGTAACCAATTACTCCCTGATGGTCGCATAATTATTGTTGGTGGAAGAAGGGCTTTCACTTACGAGTTTTATCCCAAGAACCCTCAA GAAAGAGACAATTTCACATTGCCTTTCTTAATACACACCAGAGACCCTCAAGAAGAGATCAATCTTTATCCCTTCTTGCACCTCTTGCCTGATGGTAACC TTTTCATTTTTGCTAACAACCGATCCATCTCGCTTGACTACAAACGTAATAAGGTGATCAAGGAGTATCCGGTTATGCCTGTTGGTGACAGAAGAAACTA CCCTTGCACTGGCTCTTCTGTTTTGCTTCCTCTCCGGTTAACCGGAATCACTAATGTGACTGACCATCCTGAGGCAGAAGTCATGATTTGCGGTGGGGCA CAGAAAGGTGCCTATATCAAGTCCAATTATCTCCACATTTACGGGCAAGCATCAACAACTTGTGGCAGGTTAAAGGTGACGGACCCGAAACCCGAATGGG TCATGGAGCTAATGCCCATTCCTCGGATCATGAACGATATGTTACTGTTACCCACCGGAGACTTGATTATCATCAACGGCGCAACCAATGGAAGCGCTGG TTGGAATGACGCCATGAATCCAGTTTATAACCCGGTTCTTTACCAACCAGATGAAGATCCGACCCGAAGATTCGTTGTGCTTAGCTCCTCCAAGATTGCC AGGCTGTACCACTCCACAGCTGCGCTCTTGCCAGATGGCAGGATATTAGTGGGAGGGAGCAATCCGCACCAGGGGTATAATATGACAGGGAAACCCTACC CAACTGAGCTGAGTTTGGAAGCTTTTTACCTGCATTACCTGGATCCACAGTACGCGTATCTAAGACCTTCAATTTTGACAGTGGAGTTGTCCGACAGAGC GGTGTCGTATGGAGAGTTGTTCTCCGTTACCTTCGTGTGCTCCTCCTACCGTCTGGATTTGGGGGTCTCCGTCACCGTTATTGCACCGTCTTTTACTACA CACTCGTTTGGCATGAACCAGAGGATGGTGGTCCTGAACGTGGTGAGTGTGGTCCAGCTATCCATGTTTGCTTATAAGGCTAATGTGATTGGACCAATTA ATGTTAATGTGGCCCCACCTGGATATTATATGATGTTCGTTGTCCATGCTGGCATTCCTAGTAATGCTGTTTGGGTTAACGTATGCTAA
AA sequence Show only first row Show all	>Potri.010G034200.1 pacid=42797090 polypeptide=Potri.010G034200.1.p locus=Potri.010G034200 ID=Potri.010G034200.1.v4.1 annot-version=v4.1 MAIKKHPFFIFLFVFYIFMSFSPEIAHAGSYLSTITGGNWVVLQESIGISAMHMQVLRNNKVIMFDRTDFGRSNLSLPDGKCRYKDEAVKPKDCTAHAVL YDIASNTFRPLMVQTDTWCSSGSLDSSGNLIQTGGYKAGEAVIRSFTPCDDDSCDWVELSNQVLWNRRWYASNQLLPDGRIIIVGGRRAFTYEFYPKNPQ ERDNFTLPFLIHTRDPQEEINLYPFLHLLPDGNLFIFANNRSISLDYKRNKVIKEYPVMPVGDRRNYPCTGSSVLLPLRLTGITNVTDHPEAEVMICGGA QKGAYIKSNYLHIYGQASTTCGRLKVTDPKPEWVMELMPIPRIMNDMLLLPTGDLIIINGATNGSAGWNDAMNPVYNPVLYQPDEDPTRRFVVLSSSKIA RLYHSTAALLPDGRILVGGSNPHQGYNMTGKPYPTELSLEAFYLHYLDPQYAYLRPSILTVELSDRAVSYGELFSVTFVCSSYRLDLGVSVTVIAPSFTT HSFGMNQRMVVLNVVSVVQLSMFAYKANVIGPINVNVAPPGYYMMFVVHAGIPSNAVWVNVC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14430			glyoxal oxidase-related protei...		Potri.010G034200 [exp]	0	1
AT4G00680		ADF8	actin depolymerizing factor 8 ...		Potri.001G106200 [exp]	1.00	0.8453	Pt-ADF.9
AT4G38140			RING/U-box superfamily protein...		Potri.004G209600 [exp]	5.29	0.7236
AT1G04360			RING/U-box superfamily protein...		Potri.001G235100 [exp]	5.56	0.6879
AT1G53708		RTFL9	ROTUNDIFOLIA like 9 (.1)		Potri.002G235101 [exp]	6.32	0.7635
AT4G35720			Arabidopsis protein of unknown...		Potri.005G103800 [exp]	9.79	0.7132
					Potri.004G189850 [exp]	14.79	0.6537
AT1G64295			F-box associated ubiquitinatio...		Potri.001G462650 [exp]	22.78	0.6227
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.004G056301 [exp]	43.01	0.6530
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Potri.006G249500 [exp]	47.90	0.7076
ATMG00640		ATMG00640.1, OR...	hydrogen ion transporting ATP ...		Potri.007G062422 [exp]	53.17	0.7081

Compare expression of checked genes

Potri.010G034200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.