Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	NTL1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69850 781 / 0 NTL1, ATNRT1:2 nitrate transporter 1:2 (.1) AT1G27040 710 / 0 Major facilitator superfamily protein (.1.2) AT5G62730 622 / 0 Major facilitator superfamily protein (.1) AT1G59740 369 / 8e-121 Major facilitator superfamily protein (.1) AT1G33440 359 / 8e-117 Major facilitator superfamily protein (.1) AT3G25280 346 / 8e-113 Major facilitator superfamily protein (.1) AT2G02040 339 / 2e-109 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT3G25260 335 / 1e-108 Major facilitator superfamily protein (.1) AT3G54140 328 / 2e-105 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 318 / 1e-101 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G070700 [exp] 729 / 0 AT1G69850 686 / 0.0 nitrate transporter 1:2 (.1) Potri.004G064100 [exp] 426 / 7e-143 AT1G59740 417 / 2e-139 Major facilitator superfamily protein (.1) Potri.002G129500 [exp] 405 / 3e-135 AT1G27040 456 / 5e-155 Major facilitator superfamily protein (.1.2) Potri.014G036200 [exp] 394 / 1e-130 AT1G27040 428 / 6e-144 Major facilitator superfamily protein (.1.2) Potri.004G229000 [exp] 379 / 2e-124 AT1G59740 808 / 0.0 Major facilitator superfamily protein (.1) Potri.003G000800 [exp] 375 / 6e-123 AT1G59740 821 / 0.0 Major facilitator superfamily protein (.1) Potri.002G249100 [exp] 368 / 2e-121 AT3G25280 498 / 7e-173 Major facilitator superfamily protein (.1) Potri.019G067500 [exp] 365 / 5e-119 AT1G33440 734 / 0.0 Major facilitator superfamily protein (.1) Potri.010G100200 [exp] 345 / 2e-111 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036710 [exp] 783 / 0 AT1G69850 822 / 0.0 nitrate transporter 1:2 (.1) Lus10037217 [exp] 778 / 0 AT1G69850 813 / 0.0 nitrate transporter 1:2 (.1) Lus10013276 [exp] 734 / 0 AT1G69850 780 / 0.0 nitrate transporter 1:2 (.1) Lus10030799 [exp] 727 / 0 AT1G69850 771 / 0.0 nitrate transporter 1:2 (.1) Lus10033101 [exp] 702 / 0 AT5G62730 748 / 0.0 Major facilitator superfamily protein (.1) Lus10015240 [exp] 426 / 9e-143 AT1G69850 469 / 1e-159 nitrate transporter 1:2 (.1) Lus10005417 [exp] 408 / 3e-136 AT1G69850 446 / 1e-150 nitrate transporter 1:2 (.1) Lus10032876 [exp] 392 / 5e-130 AT1G27040 445 / 1e-150 Major facilitator superfamily protein (.1.2) Lus10006477 [exp] 387 / 7e-128 AT1G27040 439 / 2e-148 Major facilitator superfamily protein (.1.2) Lus10025881 [exp] 360 / 3e-118 AT3G25280 558 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.010G034300.1 pacid=42796985 polypeptide=Potri.010G034300.1.p locus=Potri.010G034300 ID=Potri.010G034300.1.v4.1 annot-version=v4.1 ATGGAACTGGAACACCAGCCGACCAGATGGGAGGGCTATGTGGATTGGAGAAACAGGCCTGCACTTCGTGGCCTCCATGGTGGCATGCTTGCTGCTTCCT ACGTCTTGGGTGTGGAGATATTGGAGAACCTGGCGTATCTAGCAAATGCTAGCAATTTGGTGATATATTTATCTGAGTATATGCACTTATCTCCATCCAA ATCGGCCAATAATGTCACGAATTTCATGGGGACGTCTTTTCTTTTGGCCCTTCTTGGAGGTTTCCTAGCTGATACTTTTTTCACGACTTATCACATCTTC CTGATAAGTGCAGCTATTGAATTCCTGGGCTTGGTGATACTGACAGTGCAAGCTCGGTCATCTTCCCTGAAGCCACCAGCTTGTAACCCAAGCAACCCCA CAATCCCATGCCAGCAAATTGATGGTGCGAAAGCAGCAATGCTGTTCACAGGCCTTTATCTGGTGGCGCTTGGCGTTGGAGGGATAAAAGGATCATTGCC GGCTCACGGGGCTGAGCAGTTTGACGAGAGCACTCCACAAGGAAGGAAGCAGAGATCGACCTTCTTCAATTACTTTGTCTTCTGTCTCTCATGTGGAGCC CTGATCGCAGTCACATTTGTTGTGTGGGTTGAAGATAACAAAGGGTGGGTGTGGGGCTTTGGAATCTCTACCATTGCAATACTCCTGTCTATCCCAATCT TTCTTGCTGGATCAGCTGCTTACAGGAATAAAATACCTTCTGGCAGTCCACTTGCAACCATTTCCAAGGTTTTGGTTGCTGCTGGAGTTAACACTTGTAT GAGCAGAAGTTCAGGCAATGCCATTGCAAGCCTGACAACGAGCCCTTCCAATCCAAATCCAACCAGCAAGGATGCAATAGATAATTCCATAGCAGTTATG CCTGCTGAAACCCCAACAAAAAGCCTCGACTGGCTTAACAAAGCGGTGGTAAACAAGCCAATCCACTCCGCATTAGAATGCACTGTACAGCAAGTGGAAG AGGTCAAGATTGTGATAAAAATCTTTCCCATATTTGCTTGCACCATCATGCTCAATTGCTGTCTTGCTCAGCTCTCCACGTTTTCTGTACAACAAGCTGA TACCATGGACACCAAGCTCGGTTCCTTGAAAGTTCCGCCAGCTTCCCTTCCCGTGTTTCCTGTGGTCTTCATTATGATGCTAGCACCCGTTTATGACCAC CTCATCATCCCATTCGCTAGGAAATTAACCAAGTCTGAAATGGGAATCACTCATCTGCAACGAATTGGCATCGGATTGGTTCTTTCCATAATAGCAATGG CAGTGGCAGCTCTTGTTGAGATTAAGAGGAAGAGAGTTGCTGCAAATTCAGGGCTAGTTGACAAATTGCCAATCACGTTCTTCTGGATAGCCTTTCAGTA TTTATTCCTAGGATCAGCTGATCTTTTCACCTTGGCAGGGTTGTTGGAATTTTTCTTCACCGAGGCACCCGCAGGAATGAGATCTTTGGCTATGTCTCTC TCTTGGGCCTCCCTGGCAATGGGGTACTACCTCAGCTCAGTGATTGTATCAATAGTTAACAATGTTACAGGTAACTCCAAGAATAGGCCATGGCTATCAG GCACGAACATCAATCACCATCATCTGGAACGATTCTACTGGCTCTTGTGTGTGTTAAGTGTTCTGAATTTCTTACATTACCTTTTCTGGGCCACCCGGTA TAAGTACTCAACAAGAGTCCAGAACTAA
AA sequence Show only first row Show all	>Potri.010G034300.1 pacid=42796985 polypeptide=Potri.010G034300.1.p locus=Potri.010G034300 ID=Potri.010G034300.1.v4.1 annot-version=v4.1 MELEHQPTRWEGYVDWRNRPALRGLHGGMLAASYVLGVEILENLAYLANASNLVIYLSEYMHLSPSKSANNVTNFMGTSFLLALLGGFLADTFFTTYHIF LISAAIEFLGLVILTVQARSSSLKPPACNPSNPTIPCQQIDGAKAAMLFTGLYLVALGVGGIKGSLPAHGAEQFDESTPQGRKQRSTFFNYFVFCLSCGA LIAVTFVVWVEDNKGWVWGFGISTIAILLSIPIFLAGSAAYRNKIPSGSPLATISKVLVAAGVNTCMSRSSGNAIASLTTSPSNPNPTSKDAIDNSIAVM PAETPTKSLDWLNKAVVNKPIHSALECTVQQVEEVKIVIKIFPIFACTIMLNCCLAQLSTFSVQQADTMDTKLGSLKVPPASLPVFPVVFIMMLAPVYDH LIIPFARKLTKSEMGITHLQRIGIGLVLSIIAMAVAALVEIKRKRVAANSGLVDKLPITFFWIAFQYLFLGSADLFTLAGLLEFFFTEAPAGMRSLAMSL SWASLAMGYYLSSVIVSIVNNVTGNSKNRPWLSGTNINHHHLERFYWLLCVLSVLNFLHYLFWATRYKYSTRVQN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Potri.010G034300 [exp]	0	1	NTL1.1
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.009G032800 [exp]	3.46	0.8940
AT1G24440			RING/U-box superfamily protein...		Potri.015G089800 [exp]	4.00	0.8927
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.008G170100 [exp]	6.00	0.8905
AT2G48020			Major facilitator superfamily ...		Potri.002G212900 [exp]	6.32	0.8899
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Potri.005G219300 [exp]	8.66	0.8874
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Potri.019G003300 [exp]	15.19	0.8801
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Potri.001G225400 [exp]	15.23	0.8372
AT3G19553			Amino acid permease family pro...		Potri.001G296100 [exp]	16.58	0.8695
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Potri.001G442200 [exp]	16.88	0.8376
AT3G53820	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.016G101300 [exp]	18.02	0.8688

Compare expression of checked genes

Potri.010G034300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.