Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27070 333 / 4e-108 5'-AMP-activated protein kinase-related (.1) AT5G03420 74 / 1e-13 5'-AMP-activated protein kinase-related (.1) AT5G39790 67 / 6e-12 5'-AMP-activated protein kinase-related (.1) AT1G09020 65 / 7e-11 ATSNF4, SNF4 homolog of yeast sucrose nonfermenting 4 (.1) AT4G16360 49 / 4e-06 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G194300 [exp] 740 / 0 AT1G27070 367 / 3e-121 5'-AMP-activated protein kinase-related (.1) Potri.017G125400 [exp] 71 / 3e-13 AT5G39790 291 / 1e-98 5'-AMP-activated protein kinase-related (.1) Potri.006G123300 [exp] 71 / 1e-12 AT5G03420 279 / 9e-86 5'-AMP-activated protein kinase-related (.1) Potri.009G021600 [exp] 51 / 1e-06 AT5G21170 319 / 1e-109 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Potri.008G216800 [exp] 49 / 5e-06 AT1G09020 628 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.010G023500 [exp] 47 / 3e-05 AT1G09020 613 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.013G020400 [exp] 47 / 3e-05 AT1G09020 715 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.005G028800 [exp] 47 / 3e-05 AT1G09020 683 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.016G006400 [exp] 45 / 8e-05 AT4G16360 415 / 5e-148 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036706 [exp] 336 / 1e-109 AT1G27070 323 / 8e-105 5'-AMP-activated protein kinase-related (.1) Lus10037220 [exp] 303 / 1e-96 AT1G27070 314 / 7e-101 5'-AMP-activated protein kinase-related (.1) Lus10030802 [exp] 219 / 9e-64 AT1G27070 204 / 2e-58 5'-AMP-activated protein kinase-related (.1) Lus10013279 [exp] 179 / 2e-49 AT1G27070 198 / 1e-56 5'-AMP-activated protein kinase-related (.1) Lus10028512 [exp] 70 / 5e-13 AT5G39790 297 / 5e-101 5'-AMP-activated protein kinase-related (.1) Lus10004490 [exp] 59 / 7e-09 AT1G09020 754 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10029909 [exp] 59 / 7e-09 AT1G09020 749 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10037504 [exp] 53 / 1e-07 AT1G09020 195 / 5e-60 homolog of yeast sucrose nonfermenting 4 (.1) Lus10037424 [exp] 53 / 2e-07 AT5G21170 305 / 2e-104 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Lus10041287 [exp] 52 / 5e-07 AT5G21170 295 / 6e-100 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0369 [poplar] [flax] GHD PF16561 [poplar] [flax] AMPK1_CBM Glycogen recognition site of AMP-activated protein kinase
Representative CDS sequence Show only first row Show all	>Potri.010G034600.1 pacid=42799973 polypeptide=Potri.010G034600.1.p locus=Potri.010G034600 ID=Potri.010G034600.1.v4.1 annot-version=v4.1 ATGCTCTCTATCACTCACGCGCCTAATTGCTTCATAAATTTGATCCCTCAAATATTTTCCCCCAACACTTCTGCTTCTAATATTCAAAATCTTAGCAGAA AAGGAAAAACAAGAAACCAAGATTTACGCTTTCTTGTAGTGAAGGGGTCGAGTGGTAGTGGATTTTTTGAGTTAAAAAACAGCTGTTGCGGTTGCGGTGG TGGATTTGTAAGGAGGTGTAATACAAGGGATTGGGAAAGTAGTGAGGGCAATATTGCATTGGAGACTGAGATTTTGGAGTTCATGAATAGTTCAAAAAAT CCAGAGATGTTTCCAAGCAAGAAACAGTTGATTGATGCAGGAAGAATGGATCTTGTTGAGGCTATCTTGAAGGAAGGAGGGTGGCTCGCTTTGGGTTGGG ATTTCGATGATAATGTTGACGACGTAGATGTTGTAGATTGGTATTCTTCTTTAACGGATAATAAAGAATGTGGTGCTGCTGGAATTCAAGACAAGGCTTT AGAGCGTAATGAAGAGCAAAGCTCTCAGGTTCCTTGCTCGTCCTCTGGTAGTTCACAAGATACAGCGACTGAGGATGATGCTGGGATTGGGGGTATACTG TATCGATTAGAGAAAGAAAGGAATATGAATTTGGGGTTTGCTTTAAAAGAAATTGAAAGCACTACTCGTGTCCAAAGTAGCAATGTTAACCATGATTTGC TCCCTAAAACCACGAAGAATGGGACAGGTGCTGGCCTCAATGGTAACAATTCACCTGGATTATTGAACCCCAAGAGTAGTGCACTCAGTGATTTGGGAGG CGGCCTTGATCATAGCAGATCTTTCTCAAATATTGATGGTTCTGGAAATTCGCTAAATCCAGACACGTGGAGAACTTGGAGCATTAAGAGGGCAGCGTTT TCAGACTTGCAATTTGAAGCTGAAGAACTTAGCTCTAATAGAACTGGTACAGGAGGTGAGGAGAGTGTTTTAGGGGACGAGATAATTGAAACAAGGGAGG GTGCTAGTGAAACTGTCAGCAGAAGGAAAGAAAACTGCTCTGATGGAGGGATTAATCAGAATCAAGTACGAAGTCGCCTACATGACCTGGAGTTAGAGCT TTCCTCTGTGCTGCAATCGTTAAAGTCAAACACTGGTGAAAGTGAATCACAGGAAGTGGATAATGGAAGAGCCTCTGATGATCTGCTGAAACTTTCTGAT GCTTGCGAGTTCCAGGAAAATGAGATAATGAATGCCCAGGATAAATTACGGTCAACAAGGGCAAAAATAGCAGTGTCAGAAGGCAAAATTGCACTTGCGA TAATTGATGCACAAAAGGTAGTGGAAGAGAAACAGAAAAGGATTGACGACGCTTGTAGAGCCTTGCAACTTCTTCGCACTGCTTGTATAGTTTGGCCTAG TTCTGCTTCAGAGGTGTTCCTAGCAGGGTCATTTGATGGTTGGGCCACCCAGAGAAGGATGGAAAAGTCTAGTGTGGGCATCTTTTCTTTGTATCTGAAA TTGTATCCAGGCAGATACGAGATCAAGTTCATTGTTGATGGTGAGTGGAGGCTTGATCCCCTACGCCCTATTGTTCACAACAACGGATACGAGAATAATC TACTCATTATCACATAA
AA sequence Show only first row Show all	>Potri.010G034600.1 pacid=42799973 polypeptide=Potri.010G034600.1.p locus=Potri.010G034600 ID=Potri.010G034600.1.v4.1 annot-version=v4.1 MLSITHAPNCFINLIPQIFSPNTSASNIQNLSRKGKTRNQDLRFLVVKGSSGSGFFELKNSCCGCGGGFVRRCNTRDWESSEGNIALETEILEFMNSSKN PEMFPSKKQLIDAGRMDLVEAILKEGGWLALGWDFDDNVDDVDVVDWYSSLTDNKECGAAGIQDKALERNEEQSSQVPCSSSGSSQDTATEDDAGIGGIL YRLEKERNMNLGFALKEIESTTRVQSSNVNHDLLPKTTKNGTGAGLNGNNSPGLLNPKSSALSDLGGGLDHSRSFSNIDGSGNSLNPDTWRTWSIKRAAF SDLQFEAEELSSNRTGTGGEESVLGDEIIETREGASETVSRRKENCSDGGINQNQVRSRLHDLELELSSVLQSLKSNTGESESQEVDNGRASDDLLKLSD ACEFQENEIMNAQDKLRSTRAKIAVSEGKIALAIIDAQKVVEEKQKRIDDACRALQLLRTACIVWPSSASEVFLAGSFDGWATQRRMEKSSVGIFSLYLK LYPGRYEIKFIVDGEWRLDPLRPIVHNNGYENNLLIIT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27070			5'-AMP-activated protein kinas...		Potri.010G034600 [exp]	0	1
AT3G56900			Transducin/WD40 repeat-like su...		Potri.016G030400 [exp]	6.63	0.7690
AT2G27210		BSL3	BRI1 suppressor 1 (BSU1)-like ...		Potri.001G215700 [exp]	28.74	0.7051
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Potri.013G079600 [exp]	32.12	0.7446
AT2G04860			Tetratricopeptide repeat (TPR)...		Potri.014G029500 [exp]	35.41	0.7434
AT1G27595			unknown protein		Potri.002G107400 [exp]	38.60	0.7445
AT1G60560			SWIM zinc finger family protei...		Potri.007G106000 [exp]	43.12	0.6884
AT2G34260		WDR55	human WDR55 \(WD40 repeat\) ho...		Potri.017G120100 [exp]	43.24	0.7033
AT4G21220		AtLpxD2	lipid X D2, Trimeric LpxA-like...		Potri.004G039400 [exp]	49.12	0.6426
AT3G06270			Protein phosphatase 2C family ...		Potri.010G028300 [exp]	54.56	0.7059
AT2G35030			Pentatricopeptide repeat (PPR)...		Potri.016G038400 [exp]	62.60	0.6600

Compare expression of checked genes

Potri.010G034600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.